Labrenzia sp. PHM005: FJ695_02100
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Entry
FJ695_02100 CDS
T06152
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
labp
Labrenzia sp. PHM005
Pathway
labp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
labp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJ695_02100 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
labp03019
]
FJ695_02100 (pnp)
03016 Transfer RNA biogenesis [BR:
labp03016
]
FJ695_02100 (pnp)
Enzymes [BR:
labp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FJ695_02100 (pnp)
Messenger RNA biogenesis [BR:
labp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FJ695_02100 (pnp)
Transfer RNA biogenesis [BR:
labp03016
]
Prokaryotic type
tRNA degradation factors
FJ695_02100 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QDG74755
UniProt:
A0A4Y6RR67
LinkDB
All DBs
Position
complement(424702..426825)
Genome browser
AA seq
707 aa
AA seq
DB search
MFDIHRVEVDWGGRPLVLETGKVARQADGAVMATYGETKVLATVVSAKEPRAGQDFFPLT
VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSH
DMENAPDILAMVAASAALTLSGVPFMGPIGGARVGYIDGEYVLNPMVDDMPESALDLVVA
GTNDAVLMVESEAKELDEDIMLGAVMFGHKGFQTVIDAIIKLAEAGAKEPREFVAADHSE
LFGKVKGIAADDLAAAYKITTKTDRKNAVDAAKAKVVEALITNAAEGEAVESNVLGEQFK
KLEAEIVRGGILDTGTRIDGRDLSTVRQISSEVGILPRAHGSSLFTRGETQGLVVATLGT
GEDEQFIDLLEGTVKSHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMLPAH
HEFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKSPVAGIAMGLIKEGERFAVL
SDILGDEDHLGDMDFKVAGSENGITSLQMDIKIDGITEEIMKVALEQAKGGRIHILGEMA
NAITEARAELGEHAPRIEMMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKIA
SSDGKAIKAAVNWINSIAAEPEVGVIYEGTVVKCVDFGAFVNFFGAKDGLVHISQLAPRK
VAKVTDVIKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKEIPKDEG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatattcatcgtgtagaagtcgactggggcggacgtccgctcgtactcgaaacg
ggcaaggttgcccgtcaagccgacggcgctgttatggcgacttacggcgaaaccaaggtt
ctggcgactgttgtttccgccaaagagccgcgtgccggccaggactttttcccgctcacc
gtgaactaccaggaaaaggcgtttgccgctggtaagatcccgggtggctacttcaagcgt
gaaggccgtccgtctgagcacgaaaccctgacgtcccgtctgatcgaccgtccgatccgt
ccgctgtttgccgatggctacaagaacgacacccaggtcgtcatcacggtcctgtcgcac
gacatggaaaacgctccggacatcctggcaatggtcgcagcctctgctgccctgacgctt
tccggtgttccgttcatgggcccgatcggcggcgcgcgcgttggttacatcgacggcgaa
tatgtgctgaacccgatggttgacgacatgccggaatccgctttggatctggttgttgcc
ggtaccaatgatgcggttctgatggttgagtctgaagccaaggaactcgacgaagacatc
atgctcggcgccgttatgttcggccacaagggcttccagacggtcatcgatgcgatcatc
aagctggcggaagctggtgcgaaagagccgcgtgaattcgttgcagcagatcattccgag
ctgttcggcaaagtgaagggtattgcagctgacgatctggccgctgcctacaagatcacg
acaaaaaccgaccgcaagaacgctgtagacgctgccaaggcaaaagtcgtcgaggcgctg
atcaccaacgctgccgaaggcgaagctgttgaaagcaacgtgctcggcgaacaattcaag
aagctggaagctgaaatcgttcgcggcggcatcctggacaccggcacccgtatcgacggc
cgtgacctgtctaccgtgcgccagatttcgtctgaagtcggcattctgccgcgtgcgcac
gggtcttctctcttcactcgcggtgaaacgcagggcctcgttgttgcgaccctcggtact
ggcgaagatgagcaattcatcgaccttctggaaggcactgtgaagtcccacttcatgctg
cactacaacttcccgccatactctgttggtgaaaccggccgtatgggctctccgggacgc
cgcgaaatcggtcacggcaagctggcctggcgcgcgatcaacccgatgctgccggcgcac
cacgaatttccgtacaccctgcgggttgtttccgagatcaccgaatccaatggttcgtcc
tccatggcaaccgtttgcggtacctctctggcgctgatggatgcgggtgtgccgctgaag
tcaccggttgccggtatcgccatgggcctgatcaaggaaggcgagcgcttcgcagtcctg
tccgacatcctgggtgacgaagatcacctcggcgacatggacttcaaggtggccggttct
gaaaacggcattacctcgctgcagatggacatcaagatcgacggtatcaccgaagagatc
atgaaggtcgctctggagcaggccaaaggcggccggatccacatcctcggcgaaatggcc
aatgccattacagaagcccgcgcagagcttggcgaacacgcaccgcgcatcgaaatgatg
aaaattccggtcgacaagatccgtgaagtcatcggttcgggcggcaaggttatccgtgag
atcgttgaaaagaccggcgcaaaggtcaacattgaagacgacggcaccgtcaagatcgcc
tcttccgatggcaaggccatcaaggcagctgtcaactggattaactccatcgcagctgag
ccggaagttggcgtgatctacgaaggtactgttgtgaagtgcgttgacttcggcgcattc
gtgaacttcttcggcgcgaaagacggcctggttcatatttcccaactggccccgaggaaa
gtcgcaaaggtcacagacgtgatcaaggaaggcgacaaggtctgggtcaagctcatgggc
tttgacgagcgcggcaaggtccgcctgtccatgaaagtcgttgatcaggaaaccggtaag
gaaatcccgaaagacgaaggctaa
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