Labrenzia sp. PHM005: FJ695_03110
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Entry
FJ695_03110 CDS
T06152
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
labp
Labrenzia sp. PHM005
Pathway
labp00521
Streptomycin biosynthesis
labp00523
Polyketide sugar unit biosynthesis
labp00525
Acarbose and validamycin biosynthesis
labp00541
Biosynthesis of various nucleotide sugars
labp01100
Metabolic pathways
labp01110
Biosynthesis of secondary metabolites
labp01250
Biosynthesis of nucleotide sugars
Module
labp_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
labp00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
FJ695_03110 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
FJ695_03110 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
FJ695_03110 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
FJ695_03110 (rfbB)
00525 Acarbose and validamycin biosynthesis
FJ695_03110 (rfbB)
Enzymes [BR:
labp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
FJ695_03110 (rfbB)
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Gene cluster
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
adh_short
KR
NAD_binding_8
Motif
Other DBs
NCBI-ProteinID:
QDG74934
UniProt:
A0A4Y6RR76
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Position
complement(677484..678536)
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AA seq
350 aa
AA seq
DB search
MTRVIVTGGAGFIGSALVRHLVRNVGADVLTIDKLTYAGNLESLKEVDNAPNHRFLKEDI
CAGPEMIKAVAEFQPDYIMHLAAESHVDRSITGAAEFVQTNVVGTMAMLEAARAYWTGLE
GEKKDTFRFLHVSTDEVYGSLGDEGLFKETTPYDPSSPYSASKAASDHLAIAWYRTYGLP
VVLSNCSNNYGPYHFPEKLIPLMILNALDGQPLPIYGTGMNVRDWLYVDDHAKALYTIVS
KGRLGEKYNVGGRNERTNLDVVKTICSILDRHSPKTGPHERLITYVEDRPGHDARYAIDA
TKLETELGWRAEENFDTGIEKTIKWYLENDWWWGPLRNKVYSGKRLGLVK
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtgtaattgtcaccggcggtgccggcttcatcggatcggctttggtccgccat
cttgtccgcaatgttggcgcagatgttctgaccatcgacaagctgacctatgccggcaat
ctggaatctttgaaggaagtcgacaacgcacccaatcatcgcttcctaaaggaagacatc
tgcgccgggccggagatgatcaaggcggtggccgagttccagccggactacatcatgcat
ctggcggccgaaagccatgtcgaccggtcgattaccggggcagccgaattcgtccagacc
aacgtcgtcggcaccatggcgatgctggaagctgcccgcgcctactggacgggcctggaa
ggcgagaagaaagacaccttccgcttcctgcatgtctcaaccgacgaagtctacggctca
ctcggcgatgagggcctcttcaaggaaacgacgccttacgatccatcctcgccttattct
gcttccaaggctgccagtgatcacctggcgattgcctggtaccgaacctacggtctgccg
gtggttctgtccaactgctccaacaactatggcccgtaccacttcccggaaaagctcatt
ccgctgatgatcctgaatgcgctcgatggtcagccgctgccgatctatggcacgggtatg
aacgtgcgcgactggctctatgtcgatgatcacgccaaggcgctttacaccatcgtctcc
aagggccgcctcggcgagaaatataatgtcggcgggcgcaacgagcgcaccaacctcgac
gtcgtcaagacgatctgttcgatcctcgaccggcatagcccgaagacaggcccgcacgag
cgtctgatcacctatgtggaagaccggccaggccatgatgcccgctatgcgatcgatgcg
accaagctggaaaccgaactcggctggcgcgcagaagaaaacttcgacaccggcatcgaa
aaaaccatcaagtggtacctggaaaacgactggtggtggggcccgctccgcaacaaagtc
tactcaggtaaacgcctcggattggtgaagtag
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