Labrenzia sp. PHM005: FJ695_12675
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Entry
FJ695_12675 CDS
T06152
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
labp
Labrenzia sp. PHM005
Pathway
labp03420
Nucleotide excision repair
labp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
labp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FJ695_12675
03430 Mismatch repair
FJ695_12675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
labp03400
]
FJ695_12675
Enzymes [BR:
labp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJ695_12675
DNA repair and recombination proteins [BR:
labp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FJ695_12675
MMR (mismatch excision repair)
Other MMR factors
FJ695_12675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
DUF3553
AAA_11
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
QDG76654
LinkDB
All DBs
Position
2828366..2830810
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AA seq
814 aa
AA seq
DB search
MTDPDGYDDPFDDPFQPIGTRADAPPTPAPPSPGGGIAARAMAARRAPDYLTGLNPEQKL
AVETTQGPVLVLAGAGTGKTRVLTTRIAHILASGLARPSEILAVTFTNKAAREMKERIAT
FVGGNVEGMSWLGTFHSICVKILRKHAELVGLKSSFSILDTDDQIRLIKQILQAEGVDDK
RWTAKAFAGMLDGWKNRALTPDQVPEGEARAFANGRGRRIYEEYQERLSILNAADFGDLL
LHVITLFKTRPDVLTEYQSRFRYMLVDEYQDTNIAQYLWLRLLAQGNPNVCCVGDDDQSI
YGWRGAEVDNILRFEHDFKGATVIRLERNYRSTSHILAAASHLISFNEGRLGKTLFTDFH
EPDHDLVSVASVWDSEEEARTIGDEIEALQSKGHSLNEMAVLVRASFQMREFEERFITLG
LNYRVIGGPRFYERMEIRDAMAYLRCVAQPADDLAFERIVNTPKRGLGDATLKLVHGLAR
AERIPLMQAASQLIDTEELKPKPRNSLKTVLDNFERWRRQLDTMKHTDLAEVILDESGYT
EMWRQDRSADAPGRLDNLKELIRSMEEFESLAGFLEHISLVMDRDSADASDAVSIMTLHS
AKGLEFDTVFLPGWEEGLFPHQRALDESGRAGLEEERRLAYVGITRAKKRAKLYFASNRR
IHGQWQSSVPSRFLDELPPEHVEIAEASSNYGGYGGGGYGPSRFDSHDTFESGSYSTPGW
RRAQRASQASGGFSDSGGRGYQSARQKRQGPLTIEGELVAKSVSETPSDYSIGERVFHIK
FGYGAIKSIEGNKLTIDFEKAGQKKVIDSFVERH
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccggacgggtatgacgatccttttgacgatccttttcagcccatcgggacg
cgggcggatgccccccctacacctgcgcctccttctccagggggcgggatcgcggcacgg
gccatggcggcccggcgggcgccggactatctgaccggcctcaatccggaacaaaagctg
gcggtggaaaccacccaaggcccggtcctggtgctggcaggggcgggcaccggcaaaacc
cgggttctgaccacacggattgcccatattctggcctccggccttgcgcggccgtccgaa
attctggctgtgaccttcaccaacaaggccgcgcgggaaatgaaggaacgcattgccacc
tttgtcggcggcaatgtggaaggcatgtcctggctcggcacgttccactccatctgtgtc
aaaattctgcgcaaacacgccgagctggtcggtttgaaatccagcttttcgatcctcgat
acagatgatcagatccggctgatcaaacagatccttcaagccgaaggggtggatgacaag
cgctggaccgccaaagccttcgccggcatgctggacggttggaaaaacagagctttaacg
ccggatcaggtgccagaaggcgaagcgcgggcctttgccaatggccggggacggcggatc
tatgaagagtatcaggagcgcctatcgatcctgaatgcagccgattttggcgatttgctg
ctgcacgtgatcacgctcttcaagacacgcccggatgtcttgaccgaatatcaaagccgc
ttccgctatatgctggtggacgagtatcaggataccaacattgcccagtatctgtggctg
cgattgctggcgcagggcaatccaaatgtctgctgtgttggcgatgacgatcagtcgatc
tacggctggcgcggggcggaagtcgacaacatcctgcgctttgaacatgactttaagggc
gcaacggtcatccgcctggagcgcaattaccgctccaccagccacattctggccgcagct
tcccacttgatttcgttcaacgagggccgtctgggcaaaacgctgttcaccgactttcat
gaaccggaccatgatctggtttcagttgcgtccgtttgggattcagaagaagaagcccgg
acaattggcgatgaaatcgaggcgctgcaatccaaagggcacagcctcaatgagatggcg
gttctggtgcgcgcgtccttccaaatgcgcgagtttgaagagcgcttcattacccttggc
ttgaactaccgcgtgatcggcgggccgcggttttatgagcgcatggaaatccgggatgcc
atggcgtacttgcgctgtgttgcgcagccggccgatgatttggcgttcgagcggatcgtc
aacacacccaagcgcggtttgggtgatgccaccttgaaattggtgcatggtcttgcgcgg
gccgagcgcattccgctgatgcaggccgccagccagctgatcgacaccgaggagctcaag
cctaaaccgcggaactccctcaagactgtcttggacaatttcgagcgctggcggcgccag
ctcgacaccatgaaacacaccgatctggccgaggtcattctggatgaaagcggctacacg
gagatgtggcgccaggaccgctccgcggacgcgcccgggcggttggacaacttgaaagaa
ctcatccgctctatggaagagttcgagtcactggccgggttcctggagcacatttccctt
gtgatggatcgggatagtgccgacgcttctgacgccgtttccatcatgacgttgcattcg
gccaaggggctggagttcgatacggtcttcctgccaggctgggaagaaggtttgttcccg
caccagcgtgcattggatgaaagcggccgggcgggcctcgaagaagagcggcggttggcc
tatgtcggcatcacgcgggcgaaaaagcgggccaaactctattttgcctccaaccggcgc
attcacgggcaatggcaatcgagcgtgccatcacggttcctggatgaactcccgccagag
catgtcgagatcgctgaagcctcgtccaattatggcggctacggcggaggcggatatggt
ccttcgcggttcgacagtcacgacacgtttgaaagcggcagctattcgacgccgggctgg
agacgggcgcagcgcgcgtctcaagcctccggcgggttttcagatagcggcgggcgtggg
tatcaatccgcacggcaaaaacgccaagggcctttgacgattgagggcgagctggttgcc
aagtccgtcagcgaaacaccgtcagactattccatcggcgaacgggtgtttcacatcaag
ttcggttatggtgcgatcaaatcgatcgagggcaacaagctgaccatcgacttcgaaaag
gcgggccagaagaaggtgatcgacagtttcgttgagcgccattga
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