Labrenzia sp. PHM005: FJ695_16315
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Entry
FJ695_16315 CDS
T06152
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
labp
Labrenzia sp. PHM005
Pathway
labp03030
DNA replication
labp03430
Mismatch repair
labp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
labp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJ695_16315 (dnaE)
03430 Mismatch repair
FJ695_16315 (dnaE)
03440 Homologous recombination
FJ695_16315 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
labp03032
]
FJ695_16315 (dnaE)
03400 DNA repair and recombination proteins [BR:
labp03400
]
FJ695_16315 (dnaE)
Enzymes [BR:
labp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FJ695_16315 (dnaE)
DNA replication proteins [BR:
labp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FJ695_16315 (dnaE)
DNA repair and recombination proteins [BR:
labp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FJ695_16315 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
T2SSK
Motif
Other DBs
NCBI-ProteinID:
QDG77309
UniProt:
A0A4Y6RWH6
LinkDB
All DBs
Position
3600306..3603800
Genome browser
AA seq
1164 aa
AA seq
DB search
MTDSNSALDAVVHPSTQAGNGPGYVHLRVHSALSLLEGALPIKKLLDLAKADDQPALAIA
DTNNLFGAQEFSAKAWGAGIQPLTACQLSVFFDDGLDSGRRGEPALADLVLIAMTETGYG
NLMELTSRAFLDTETGLRPHVTLSYLLSKAEDVIVLTGGSLGAVGAALLAGRKELAESRL
KTLKEGFPGRCYVEIQRHGMDSEKKTEEAFLDLAYAMDLPLVATNEAFFPKREDYEAHDA
LICISEGRVIIESDRRRLTPEHYFKTRAEMCALFSDLPEALASTVEIAKRCSFRPMRRAP
ILPRFAGADADPEEAERAESEELKRQAREGLQARLDAHGLAPGLEEKDYWERLDYETGII
ERMKFPGYFLIVADFIKWAKNQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFL
NPERVSMPDFDIDFCQSRREEVIRYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMP
YGQVDRLCKLVPANPANPVTLGQAIEDEPRLREAAKEEEIVDRLLGMAQKLEGLYRHAST
HAAGVVIGDRPLEQLVPLYRDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVK
LIERRGITVDVAGLPIDDKKSYDLLTRGETFGVFQLESQGMRRAVAGMKPDRFEDIIALV
ALYRPGPMENIPVYNAVKHGEQEPDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSL
GEADLLRRAMGKKIAAEMEVQRARFVDGAVERGINKTQAGTIFDLVAKFANYGFNKSHAA
AYALVSYHTAWLKANHPVEFMAASMTLDMGNTEKLGDFRQEARRMGIEVVPPSINRSQVY
FDVSDGKILYAMGAVKGVGEQAVEHIVEVRGDKPFQSLGDFARRISPKALNKRTLENLVA
AGAFDELEPSRARVFEGLDRVMGLAQRTEENKTLGQDELFGGSDSEEPLQLDEVHGWTSE
EKLQREHSAIGFYLSAHPIDEYASVLEKMRAQPWAQFSEAVKKGASAGRLAGTVISMQER
KTKSGTRMGIARLSDATGQYEALLFREKLEQFRDVLQSGRSVVVLVAADLRDDEPSLIIE
QVDPIDKVAARLQKSMRVFVRDERPIASLAKQLTMRGEGDVTVIVLLENGAREVEVKLPG
RFRLSPEIAGALKAVPGVTDVQVA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgactgattcaaacagcgctctagacgcagttgttcacccatccacgcaggcgggtaat
gggcccggttatgtgcatctgcgggttcattcggcactgtcgcttctagaaggcgcgctg
ccgatcaagaagcttttggatctggccaaggccgacgaccagccggcgctggcgattgcc
gacaccaacaatctttttggcgcccaggagttttcggccaaggcctggggcgcaggcatc
cagccgctaaccgcttgtcagctgtccgtctttttcgacgacggtctggacagcggccgg
cgcggtgaaccggcgctcgccgaccttgttctgattgccatgaccgaaacgggctatggc
aacttgatggagctgacctcgcgtgcgtttctggatacggaaacaggcctgcgcccgcat
gtcaccctcagctatctcttgtctaaggctgaagatgtcatagtcctgaccggcggcagt
ctcggggctgtcggggcggcacttctggccgggcgcaaggaactggccgagagccgccta
aagacgctgaaagagggattccccggtcgttgttatgttgaaattcagcgccatggcatg
gacagcgaaaagaaaaccgaggaggccttcctcgatcttgcctacgccatggatctgccg
ctggttgccaccaatgaggcgttttttcccaaacgtgaagactatgaagcccatgatgcg
ctgatctgcatttccgaaggccgagtcatcattgaaagtgatcgtcgtcgcctgaccccg
gagcactatttcaagacaagggcggaaatgtgcgcgctcttttccgatcttcccgaggcg
cttgcctccacggtcgagattgccaaacgctgttctttccgaccgatgcggcgcgcaccg
attctaccgcggtttgccggtgcggatgcggacccagaagaagccgaacgcgccgaatcg
gaagaactgaaacgccaggcgcgcgaaggcttgcaggcccgtcttgatgctcatggcctg
gcgccgggactggaagaaaaggattattgggaacggctcgattatgagaccggcatcatc
gagcggatgaagtttccgggctacttcctgatcgttgccgatttcatcaaatgggccaaa
aaccaagacattccggttggcccgggccgtgggtcgggcgcgggctcgctggtggcctgg
tccttgacgatcaccgatctggacccgatgcggttttctctgctgttcgaacggttcttg
aatcccgaacgtgtctccatgccggactttgacatcgacttctgccagtcgcggcgggag
gaggtgatcagatacgttcaggagaagtacggccgtcagcaggttgcccagatcatcact
ttcgggtccttgcaggcgcgcgcggttctgcgggatgtcggccgggtgctgcaaatgcct
tatggacaggtcgatcggctgtgcaaattggtgccggcgaaccctgccaatccggtgacg
cttggccaggcgatcgaagacgaaccgcgcctccgggaagcggccaaggaagaagagatc
gttgacaggcttttgggcatggcgcagaagctcgaaggcctttaccggcacgcctcgacc
cacgcagccggtgtggtgattggcgaccggccgctggaacagttggttccgctctaccgc
gatccacgctccgatatgccggttgcccagttcaacatgaaaatggttgaagatgcgggc
ctggtgaaattcgactttctgggcctgaaaaccctgacggtgatcgacacggcggtcaaa
ttgatcgaacggcgcggcatcaccgttgatgtcgccggtctgccgattgacgataaaaaa
tcctacgatcttctaacccgcggcgagactttcggcgtgttccagctggaaagtcagggc
atgcgccgggccgttgccggcatgaaaccggaccgctttgaggacattattgcgctggtg
gcgctctaccgcccggggccgatggaaaacatcccggtctataacgcggtcaaacacggc
gaacaggagccggactgcctgcatccgctcctggaaccgatcctgatggagacgaatggc
atcatcgtctaccaggagcaggtgatgcagatcgcccaggttttgtccgggtattcgctc
ggcgaagcggatcttctgcgccgcgccatgggtaagaagattgccgccgaaatggaggtt
cagcgggcgcgctttgtcgacggtgccgtggagcggggcatcaacaagacccaggccggc
acgatcttcgatctggtggcgaaattcgccaactacggcttcaacaaatcccatgcggcc
gcctatgcgctggtctcctatcatacggcctggctgaaggcgaaccatccggttgaattc
atggctgcgtccatgacactcgatatgggcaacacggaaaaacttggtgatttccgccag
gaagcccggcgcatgggcattgaggtggtgccgccatccatcaaccgttcgcaggtctat
tttgatgtgtccgatggcaagatcctttatgcgatgggggctgtgaaaggtgtcggcgaa
caggccgtggaacacatcgtagaggtccgcggcgacaaaccgttccagagcctgggcgat
tttgcccgccgcatcagccccaaagcgctcaacaaacggacgctggaaaacctggttgcc
gcgggcgcctttgatgagctggaaccaagccgggcccgggtctttgaagggctcgaccgg
gtgatgggcctcgcgcagcgcacggaagaaaacaaaacactcggccaggacgaactgttc
ggcggttctgacagcgaggaacccttgcagctggatgaggtccatggctggacgtcggaa
gaaaaactccagcgggagcattcggccattggtttttatctctccgcccacccgatcgac
gaatacgcctctgtcctggaaaaaatgcgggcgcagccttgggcccagttttctgaagcg
gtgaaaaaaggcgcgtccgccggacggcttgcaggaaccgtcatatccatgcaggagcgc
aagacaaaatccggtacgcgaatgggcattgcgcggctctccgatgcaaccggccaatat
gaagccctgcttttccgcgaaaagctggaacaattccgcgatgtgctgcaatccggccgg
tccgttgtcgtgctggttgctgccgacttgcgcgacgacgaaccgtccctgatcatcgaa
caggttgacccgatcgacaaggttgctgcgcgcttacaaaaaagcatgcgggtctttgtt
cgcgacgagcggccgatcgccagtcttgccaaacagctgaccatgcgcggagagggcgat
gtgactgtgattgtgcttctggaaaacggtgcccgagaagtcgaagtaaaacttcccggc
cggttccgcctctcgccagagattgcgggtgcgttgaaagccgttccaggtgtaacggat
gttcaggttgcgtga
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