Labrenzia sp. PHM005: FJ695_20185
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Entry
FJ695_20185 CDS
T06152
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
labp
Labrenzia sp. PHM005
Brite
KEGG Orthology (KO) [BR:
labp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
labp03032
]
FJ695_20185 (topA)
03400 DNA repair and recombination proteins [BR:
labp03400
]
FJ695_20185 (topA)
Enzymes [BR:
labp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FJ695_20185 (topA)
DNA replication proteins [BR:
labp03032
]
Prokaryotic type
DNA Topoisomerases
FJ695_20185 (topA)
DNA repair and recombination proteins [BR:
labp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FJ695_20185 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
SPAR
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QDG77989
LinkDB
All DBs
Position
4466696..4469431
Genome browser
AA seq
911 aa
AA seq
DB search
MNVVIVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKDGSVKPDEDFAMSWQVDSKSQK
RLSEIASAVKEADRLILATDPDREGEAISWHVLEVLQKKRVLKDKQIERVVFNAITKKAI
LEAMDNPRELDTPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLICDR
EMEIETFQPQEYWSIFAGMKTPGGDLFQAGVTGFDGKKIGRLDIKTGDEAATIKTMLESA
SFSVDSVASKPAKRNPAAPFTTSTLQQEASRKLGFAASRTMQVAQKLYEGISIGGETSGL
ITYMRTDGVSIAGEAIAAARSVITEDFGGKYVPEKPRAYSSKAKNAQEAHEAIRPTDLSR
RPKDVAPFLDQDQAKLYELIWKRTMASQMESAVLERTTIEIVADGSGKRANLRATGSVVR
FDGFLALYQEGRDDDEDENSKRLPAVDQGAALTAASIDGKAEPIESSQHFTTPPPRYTEA
SLVKKMEELGIGRPSTYASTLQTLRDREYVELEKKQLVPQDKGRIVTAFLESFFQRYVEF
DFTASLEEQLDKISAGELSWLDVLKDFWTAFSGSVDEIKDLRVAEVIDALNELLGPHIFP
EKEDGTDARKCPSCDTGKLSLKVSRWGAFIGCENYPECGYTRQLGKPNGDEGEADDGPKV
FGEDPETGLEVSLRTGRFGPYVQLGNEAKPKRSSLPKGWSAADMDLEKALQLLSLPRDVG
EHPEDGKMITAGIGRYGPFVLHDGTYANLSTPDEVFSVGINRAVDALAEKRAKGGGRRGA
AATPLKELGEHPSEGGPVNVYDGRYGPYVKHGKINATLPKDSDPQTVTMEQAVELIAAKA
AKGGTKKKAAAKKTTAKKTTTKKAAAKDGDEKSTAKKPAAKKTAAKKTPAKSAAKAKVDA
TSEEVPWDDAT
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcgttattgtggaatcgccggcgaaagccaagacgatcaacaaatatctaggc
tccgattacacggtgctggcctcttacggccacgtccgcgatctgccggccaaagatggt
tcggtcaaacccgacgaagactttgccatgagctggcaggtcgacagcaagtcgcaaaag
cgcctgagtgagatcgccagtgcggtgaaggaggctgaccgcctcattctcgcaaccgac
cccgaccgcgaaggggaagcgatttcgtggcacgttctggaagtcttgcagaagaagcgg
gttctgaaagacaagcagatagaacgggtggtgttcaacgccatcaccaagaaggccatc
ctggaagcgatggacaacccgcgggagctggatacgccgctggtggatgcctatcttgcc
cgccgcgcccttgattatctcgtcggcttcaccctctccccggttttgtggcgtaaattg
cctggcgcccggtctgcgggacgtgtgcagtcggtcgctttgcgcctcatctgcgaccgg
gaaatggaaatcgaaacattccagccgcaagaatactggtcgatcttcgctggcatgaaa
acgccgggcggggatttgtttcaagctggcgtcaccggcttcgacggcaaaaaaattggc
cgtctcgacattaagacaggcgacgaagccgcaaccatcaaaacgatgttggaaagcgcc
agcttctccgtcgacagcgtcgcgtcaaaacccgccaaacgcaatccggccgcgccgttc
accacctctaccctgcagcaggaagcctcgcgcaaactgggttttgccgcttcgcgcacc
atgcaggtcgcccaaaaactttatgaaggtatttctattggcggtgagacctctggtctg
atcacctatatgcgtaccgacggtgtctcgatcgccggggaagccattgctgccgcgcgg
tccgtcattaccgaagattttggcggcaaatatgtgccggaaaaaccgcgcgcttattcc
tccaaggccaagaatgcccaggaagcgcacgaagcgatccgcccgacagacctttcccgc
cgccctaaggatgtcgcaccgttcctcgatcaggatcaggccaagctctacgagctgatc
tggaagcgcaccatggcctcccagatggaatcggccgttctggagcgcacgaccatcgaa
atcgtcgccgacggctctggcaaacgtgccaacctgcgcgccactggctcagtcgtccgc
tttgatggcttcctggccctctatcaggaaggccgggacgatgacgaagatgaaaactcc
aagcgcctgccggcggtcgatcagggtgctgcgctgactgcagcctctatcgatggcaaa
gccgagcctattgaatcatcccagcacttcaccaccccgccgccgcgctacaccgaggcg
agcctggtgaagaagatggaagagctgggcatcggccgcccgtcgacctatgcgtccacg
ctgcagacattgcgcgaccgcgaatatgtcgaactggaaaagaaacagctcgttccacaa
gacaagggccggatcgtcaccgctttcctggaaagcttcttccagcgctatgtggagttc
gattttaccgcgagcctcgaagaacagctcgataagatttcggccggtgaactttcctgg
ctggatgtcttgaaggatttctggaccgcattctccggttctgttgatgagatcaaggac
ctgcgcgttgcggaagtcatcgacgcgctgaatgaactgctaggcccgcacatcttcccg
gaaaaggaagacggcacagacgcccgaaaatgcccgtcctgtgacaccggcaagctctcc
ttgaaagtcagccgctggggcgccttcattggctgcgaaaactatccggaatgcggctac
acccgccagctcggcaagccgaacggcgacgaaggcgaagcagacgacggcccgaaggtt
tttggcgaagaccctgaaaccggcctggaagtgtcgctgcgcaccggccggttcggcccc
tatgtacagctcggcaacgaagccaagccgaagcgttcgtcgctgccaaagggctggtca
gctgcggacatggatcttgaaaaagccctgcagctgctgtctctgccgcgcgacgttggc
gaacacccggaagacggcaagatgatcacggctggcatcggccgctatggcccgtttgtc
ctgcacgatggcacctatgccaacctttcaacacccgacgaggtcttctcggtaggaatc
aaccgcgccgttgacgccctggctgagaaacgcgccaagggcggcggacgccggggcgcg
gccgccacgccgctgaaggaactgggtgagcacccctcagaaggcggaccggtcaacgtt
tatgacggccgctatggcccttatgtcaaacacggcaagatcaacgcgactttgccgaaa
gacagcgacccgcagaccgtcacgatggaacaggcggtagagctgattgcggccaaggcc
gccaagggcggcaccaagaagaaagcggctgcgaagaaaacaaccgcgaaaaagacaaca
accaagaaggcagcggccaaggacggtgacgaaaaaagcaccgccaagaagcctgcagcc
aagaaaacggcagccaaaaagacccctgcgaaatcggcggccaaggccaaggtggatgca
acgtctgaagaggtgccctgggacgacgccacttga
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