Labrenzia sp. PHM005: FJ695_20295
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Entry
FJ695_20295 CDS
T06152
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
labp
Labrenzia sp. PHM005
Brite
KEGG Orthology (KO) [BR:
labp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
labp03016
]
FJ695_20295 (rnd)
Enzymes [BR:
labp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FJ695_20295 (rnd)
Transfer RNA biogenesis [BR:
labp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FJ695_20295 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QDG78008
UniProt:
A0A4Y6RXZ7
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All DBs
Position
4490071..4491255
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AA seq
394 aa
AA seq
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MEVITKTKDLAAACQQLATNDFVTVDTEFLRETTFWPKLCVIQMAGPDMAFIVDALAEGL
DLAPFFDLMRDENVTKVFHAARQDIEIIYHLGGLIPAPLFDSQVAAMVCGFGDSISYDQL
VYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLREAYQFLKANLAEQNRTHWVQD
EMKVLTSVGTYRTDPDQAWKRLKLRVRKPIELAVMMEVAAWRETEAQTRNVPRSRVIKDD
AIYELAAQQPANPEALGRLRTIPRGFERSRSADDILKAVRRALDIPKSDLPKLPKGRQAP
DGSAAAVDLLKVLLKLISEAQGVAAKVIATVDDLEKIAADDNADVAALKGWRRELFGETA
LKLKRGEVALAFQNRQITILEQTQAKADATEAAE
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgattacaaaaacaaaagaccttgccgctgcctgtcagcagcttgctaccaac
gacttcgtcactgtcgacacggagttcctccgcgaaaccaccttctggcccaagctgtgc
gtcatccagatggcagggccggatatggcgtttatcgttgatgcgctggcggaaggcctt
gatctcgccccctttttcgaccttatgcgcgacgagaatgtgacaaaggtgtttcatgcc
gcgcgtcaggacattgagatcatctaccatctcggcggattgatcccggcgcctctgttc
gattctcaggtggccgcgatggtctgcggctttggcgattccatttcctatgatcagctt
gtctacaaagtcaccggcgcccggatcgacaagtcttcgcgctttaccgattgggcccgg
cggccattgaccgccaaacaactcgattacgcgctggccgacgtcacccatttgcgcgaa
gcctatcagttcctaaaagccaatctggctgaacagaaccggacccattgggtgcaggac
gagatgaaggtgctgacatcggttggcacctaccgaacagatccggaccaagcgtggaaa
cggctcaagctgcgggtgcgcaagcccattgaacttgctgtgatgatggaagtcgctgcc
tggcgagaaaccgaagctcagacccgcaatgtgccgcgcagccgggtgatcaaggacgac
gcaatctatgaacttgccgcccagcagccggcaaacccagaagccttagggcgtctcaga
accatcccacgcggatttgagcggtcccgcagcgctgacgacattctgaaggccgtccga
cgcgctttggacattccaaaatcagacctgccgaaattgccaaaaggccgtcaagcgccg
gatggatctgcagcagcggttgatcttctgaaggtcttgctgaagctgatcagcgaagcc
caaggtgttgccgccaaggtcattgcgaccgtcgatgatctggaaaaaattgcagccgac
gacaatgccgatgtggccgcgttaaaaggttggcgccgggagctgtttggggaaaccgcg
ctgaaactcaaacgcggagaagttgctttggccttccagaaccgtcagatcaccattctg
gaacaaacgcaggctaaggccgacgcgaccgaggcggcggagtaa
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