Labrenzia sp. PHM005: FJ695_24670
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Entry
FJ695_24670 CDS
T06152
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
labp
Labrenzia sp. PHM005
Pathway
labp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
labp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJ695_24670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
labp03019
]
FJ695_24670
03009 Ribosome biogenesis [BR:
labp03009
]
FJ695_24670
Enzymes [BR:
labp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FJ695_24670
Messenger RNA biogenesis [BR:
labp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJ695_24670
Ribosome biogenesis [BR:
labp03009
]
Prokaryotic type
rRNA helicases
FJ695_24670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QDG78802
UniProt:
A0A4Y6S0C7
LinkDB
All DBs
Position
5449937..5452063
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AA seq
708 aa
AA seq
DB search
MTDLMSLAPALKAALAKRGYESLTPVQESVLSEAPAEADLLVSAQTGSGKTVAFGLALAS
TILGEEETLGKPGAPVALAIAPTRELALQVKEELTWLYGEAGAVTASCVGGMDPRTERRA
LDRGVHIVVGTPGRLRDHIERGALDLSELRAVVLDEADEMLDMGFREDLEFILDAAPQER
RTLMFSATVPRPIAELAKRFQKDAVRLSTINAREQHVDIDYVAHPVAPNERENAIINVLR
LHEAEKAIVFCQTREGVSRLTARLANRGFSIVSLSGELSQEQRTAALTAMKNGTARVCVA
TDVAARGIDLPNLDLVIHADLPTGKAALLHRSGRTGRAGRKGTCVLMVPFPRRRQAERTL
HFANITATWKGAPTSDEIRAKDKERLLADPVLSAELEEEERAIAVELLALHSAEQLAAAF
VKLRQSRLPAPEDVGELNESSLKGRDAGARGGRSAEITGKFDDGVWFSLSLGHRQRAEPR
WILPLICRAGHVTKREVGAIKIFQNQLYFEIDGKHGERFNEVVKREGTGEENVNITLLDA
RGGKIPQPPKEDNFRGGGNRDRGNRFRGDRGDRNDRGDRGDRGGYQNRRPRKGDAPDYEE
MGREDTLKPDRPKRGPKRDFDGPRGKKRRRDDGDAAPHHPAYEPLDMKALSGDRDGDAPR
KARKPRDTDGEAPRKGKPKAGGKPAGAKKKAPKKNKPSRAQRKADRAK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttgatgtcgctcgccccggcgctgaaagccgcgctggcgaaacgtggctat
gaaagcctcaccccggttcaggaaagtgtcctgagcgaagcccccgctgaagcagatctt
cttgtctccgcgcaaaccggttcaggcaaaaccgttgcatttggcctggcattggcttcg
accatcctcggcgaagaggaaacgctcggcaaacccggcgctccagtggcactcgcgatt
gctccgacacgtgaacttgcactgcaggtgaaggaagaactcacctggctttacggcgaa
gctggcgcagtcacagcgtcttgcgtcggcggcatggatccgcgtaccgaacgccgagcc
ttggaccggggagtccatatcgttgtcggcactccgggtcgtctgcgcgaccatattgaa
cgcggagccctcgatctttcagaattgcgcgctgtcgtgctcgacgaagccgatgaaatg
ctcgacatgggcttccgtgaagatttggagttcattctggacgcagcgccacaagagcgc
cggaccttgatgttctccgcgacagttcccaggccgattgccgagcttgccaagcgtttt
cagaaagatgccgtacgcctgtccacgatcaatgcccgtgagcagcatgttgatatcgac
tatgtggcacaccccgtggcaccgaatgagcgcgaaaacgccatcatcaacgttctacgc
ctgcacgaagcagaaaaggcgatcgtattctgccagactcgtgaaggtgtcagccgccta
accgcccggcttgcaaatcgaggcttctcaattgtctcgctttctggtgaactcagccag
gagcagcggacagccgctctcaccgctatgaagaacggcacggccagggtttgtgtggca
accgacgtcgccgcccgcggcatcgacctgccaaatttggacttggtgattcacgctgat
ctgccgaccggaaaagcggccctccttcaccgatcaggtcgaactggccgcgcgggccgc
aaaggcacctgcgtgctgatggttccgttcccacgccgccgtcaggctgaacgcaccctt
cattttgcaaacatcacggccacctggaaaggcgcaccgacgtcggatgaaattcgcgcg
aaggacaaggaaaggctgctggccgatccggtcttgtccgccgaactggaagaagaagaa
cgggcaattgccgtagaacttctggcacttcacagtgcggagcagctggcagcagcgttc
gtcaaattgcgtcaatcccgcttgcctgcaccggaagatgttggtgagctgaatgaatca
tcactcaaaggacgcgacgccggcgcacgtggcggccgcagcgccgaaatcaccggcaaa
tttgatgacggtgtttggttctcattgtctctcggacatcggcagcgcgcagaaccacgt
tggatcctcccactgatttgccgtgctggtcacgtcactaaacgtgaagtcggtgccatc
aagatcttccagaaccagctctattttgaaatagacggaaaacacggcgaacgcttcaac
gaagttgtcaaacgcgaaggtaccggcgaggaaaacgtcaacatcacgcttctcgatgcg
cgtggcggcaaaatcccgcaaccgccgaaggaagacaacttccggggcggtggcaatcgg
gatcgaggcaaccgcttccggggagatcgcggagacagaaatgaccgcggtgatcgcggc
gaccgcggcggctaccagaaccgccggccgcgcaaaggcgatgccccggactatgaagag
atgggccgggaagacacactgaaaccggacaggccgaaacgcggcccgaagcgcgacttc
gatggtccgcgtggcaaaaagcgccgccgggacgacggtgatgccgctccacatcatccg
gcctatgaaccgctggatatgaaggcactctccggcgaccgggacggtgatgccccgcgc
aaagcccgtaagccacgcgataccgacggtgaagccccacgcaaaggcaaaccgaaagcc
ggcggcaaaccggccggggccaaaaagaaggcgccgaagaaaaataaaccgtcccgtgcc
cagcgcaaggcggaccgcgcgaagtaa
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