Labrenzia sp. PHM005: FJ695_26110
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Entry
FJ695_26110 CDS
T06152
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
labp
Labrenzia sp. PHM005
Pathway
labp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
labp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJ695_26110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
labp03019
]
FJ695_26110
Enzymes [BR:
labp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FJ695_26110
Messenger RNA biogenesis [BR:
labp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJ695_26110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDG79065
LinkDB
All DBs
Position
complement(5779637..5780929)
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AA seq
430 aa
AA seq
DB search
MTKFDELGLSEHLLKAVAENGYDAPTPIQQKAIPLVLDGRDLMGLAQTGTGKTAAFGLPL
IERLLAEPQKPTAKGTRALILAPTRELVNQIAKNLISFLKTTPLRVTSVVGGVSINGQIK
RLSRGTDILVATPGRLLDLVDRKAVDLGSASYLVLDEADQMLDLGFIHALRRIASLVAKE
RQTLLFSATMPKQINELAQSYLTDPARVEVSPAGRTADKIRQAVHFMDAKAKTGFLVDVL
AGQPDDMSLVFCRTKHGAERLMRKLSQAGIAAGSIHGNKSQNQRDRAIKELRAGDINVLV
ATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGADGDAIALCAPEEIGLFRQI
EKLIGIDIAVASGEVPPMSAAKSAKRGKNGKSGGSGRPRFNKAAGAGDNDNGRRFSKNRR
RRPQSRKTAA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaatttgatgagctcgggctgtccgaacaccttctgaaggctgttgcggagaac
ggctacgatgcgccgacgccgatccagcaaaaagccataccgcttgtgctcgatggccgg
gacctgatgggacttgcccagacaggcacaggaaaaactgcggcttttggcttgccgctg
atcgagcgtcttctcgcggagccgcaaaagccgacggccaaagggacgcgcgcgctgatt
ctggcgccgacccgcgagctggtcaatcagatcgccaagaacctgatctcgttcttgaag
accacaccgctgcgggtcacatccgttgtcggcggtgtttcgatcaatggccaaatcaag
cgtctgtccagaggcactgatattctggtggcaacaccgggccgcttgctcgacctggtc
gaccgcaaggcggtggatcttgggtctgcgtcttatctcgtcctcgacgaagccgatcag
atgctggatcttggttttattcatgccctgcggcgcattgccagcctggttgccaaggaa
cgtcagacgcttctgttctccgcaaccatgcccaagcagatcaacgaattggcgcagtct
tatctgacggatccggcgcgtgttgaagtgtctccggccggccgtacagctgacaagatc
cgccaggcggtgcattttatggatgccaaggccaagaccgggtttttggtcgatgttctg
gcgggccagccagacgacatgtctctggtgttctgccgcaccaaacacggtgccgagcgg
ctgatgcgcaagctcagccaggcggggattgccgccggctccattcacggcaacaaaagc
cagaaccagcgggatcgagccatcaaagagttgcgggccggtgacatcaacgttctggtg
gcaaccgatgttgcagcccgcgggatcgacatcccaggcgtcagccatgtctacaatttc
gaactcccggaagtggcggaagcttatgtgcaccggattggccgcacagcccgggcaggg
gccgatggcgatgccattgccctgtgcgcaccggaagagattggcctgttccgccagatc
gaaaaactgatcggaattgatatcgccgttgcgagcggcgaggtgccgcctatgtcggct
gccaaaagcgcaaaacggggtaaaaacggcaagtccggcggttctggaaggcccaggttc
aacaaggccgctggagcaggggacaacgacaatggccgccggtttagcaaaaatcgccgc
cgccgtcctcagtcgcggaaaactgccgcgtaa
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