KEGG   Labrenzia sp. VG12: CHH27_06125
Entry
CHH27_06125       CDS       T04984                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
labr  Labrenzia sp. VG12
Pathway
labr02024  Quorum sensing
labr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:labr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHH27_06125
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CHH27_06125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:labr03019]
    CHH27_06125
   03036 Chromosome and associated proteins [BR:labr03036]
    CHH27_06125
Messenger RNA biogenesis [BR:labr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CHH27_06125
Chromosome and associated proteins [BR:labr03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CHH27_06125
SSDB
Motif
Pfam: Hfq Hfq_1 AcMNPV_AC11
Other DBs
NCBI-ProteinID: ASP32876
LinkDB
Position
complement(1343691..1343945)
AA seq 84 aa
MAERAQNLQDTFLNHVRKQKTPLTIFLINGVKLQGVVTWFDNFCVLLRRDGHSQLVYKHA
ISTIMPNGPVQLFDQAEENAEKAS
NT seq 255 nt   +upstreamnt  +downstreamnt
atggctgagcgcgcacaaaatctccaagacacttttcttaatcacgttcgcaaacaaaaa
actcctctgacaatttttctcattaatggtgtgaaattgcagggcgttgtgacctggttt
gacaatttctgtgtcctgctgcgccgggacgggcactcgcagctggtttacaaacacgcg
atttccacaattatgccaaacggacctgttcaactgttcgatcaggcagaggaaaacgct
gaaaaggcaagctga

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