Labrenzia sp. VG12: CHH27_06835
Help
Entry
CHH27_06835 CDS
T04984
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
labr
Labrenzia sp. VG12
Pathway
labr03030
DNA replication
labr03430
Mismatch repair
labr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
labr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHH27_06835
03430 Mismatch repair
CHH27_06835
03440 Homologous recombination
CHH27_06835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
labr03032
]
CHH27_06835
03400 DNA repair and recombination proteins [BR:
labr03400
]
CHH27_06835
Enzymes [BR:
labr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHH27_06835
DNA replication proteins [BR:
labr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CHH27_06835
DNA repair and recombination proteins [BR:
labr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CHH27_06835
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
DUF655
McdB_C
Motif
Other DBs
NCBI-ProteinID:
ASP36674
LinkDB
All DBs
Position
complement(1490620..1494078)
Genome browser
AA seq
1152 aa
AA seq
DB search
MPDGGGQAGPGYVHLRVHSALSLLEGALPIKKLLDLAAADNQPALAIADTNNLFGAQEFA
GKAWGSGIQPITACQLSVFFDDGLEGARKGEPVLADVVVIAMTEAGYGNLMELTSRAFLD
TETGLRPHVSAQYLLSKSDDVIVLTGGVSGPVGAALLAGRKDLAETRLRTLADAFSGRCY
VEIQRHGMEAERKTEDAFLALAYELDLPIVATNEAFFPKREDYEAHDALICISEGRVLIE
DDRRRLTPEHYFKSRAEMCALFADLPEALASTVEIARRCSFRPLKRAPILPRFAGADADP
EEAERAESAELMRQAREGLQARLDAHGLAPGLEEKDYWERLDYETGIIERMKFPGYFLIV
ADFIKWAKAHDIPVGPGRGSGAGSLVAWALTITDLDPMRFSLLFERFLNPERVSMPDFDI
DFCQSRREEVIRYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVP
ANPANPVTLGQAIEDEPRLREAAREEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPL
EQLVPLYRDPRSDMPVAQFNMKMVEEAGLVKFDFLGLKTLTVIDTAVKLIERRGINVDVA
GLPIDDLKTYELLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIP
VYNAVKHGEQEPDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGK
KIAAEMEVQRARFVDGAVERGINKTQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWL
KANHPVEFMAASMTLDLGNTDKLGDFRQEARRMGIEIVPPSINRSQVYFDVADGQILYAM
GAIKGVGEQAVEHIVEVRGDTPFKSLGDFARRISPRALNKRTLENLVAAGAFDELEPSRA
KVFEGLDRIMGLAQRSEENRTLGQDELFGGSDSEEPLQLDEVHGWTNEEKLQREHAAIGF
YLSAHPIDEYASVLKKMRAQPWTQFAEAVKQGASHGRLAGTVVSMQERKTKSGTRMGIAR
LSDATGQYEALLFREKLEQFRDVLQAGRSVIVLVGADMRDDEPSLRIEQVDPIDKMAARL
QKSMRVFVRDERPIQSLAKQLQVRGEGDVTVIVLLENGAREVEVKLPGRFRLSPEIAGAL
KAVPGVTDVQLA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgatggcggtggtcaggcggggccgggctatgtccatctgagagtgcactcggca
ttgtcgctgctggaaggcgcgctgccgatcaagaaacttctggatctggcggcggctgac
aaccagccggccctggcgattgccgatacgaacaatctctttggtgctcaggagtttgcc
ggcaaggcctggggaagtggcattcagccgatcacggcctgccagctgtcggtgttcttt
gatgatggtctggaaggcgcgcgcaagggagagcctgtccttgcggatgttgtcgtgatt
gccatgacggaagccggttacggcaacctcatggaactgacctcgcgggccttcctggat
acagagaccggtctgcggccccatgtttcggcgcagtatctcctgtccaagtccgatgat
gtgatcgtgttgaccggaggcgtctcgggacctgtcggcgcggccttgctggcgggccga
aaggacctggccgagacccggcttcgaacccttgcagacgcgttttccggccggtgttac
gtcgagatccagcgtcacggcatggaagccgagcgcaagaccgaggacgcgtttctggcc
cttgcctatgagcttgacctgccaatcgttgcaaccaacgaggcgttttttcccaagcgt
gaggactatgaagcccacgacgccctgatctgtatatccgaagggcgggttctgatagag
gatgaccggcgcaggctgacgccggaacactatttcaagagccgggccgaaatgtgcgca
ctgttcgcggacctgccggaggctctggcgtcgacggtcgagattgcccgtcgctgcagc
tttcgcccgctcaagcgggcaccgatcctgccgcgttttgcaggcgccgatgctgatccg
gaagaagcggaacgcgcggaatcggccgagctgatgcgccaggcccgcgaaggcctgcag
gcgcgtcttgatgcccacggcctggcgccggggcttgaggaaaaggattactgggaacgg
ctggactatgagaccggcatcatcgaacggatgaaattcccgggttacttcctgatcgtt
gccgactttatcaagtgggcgaaggcacatgacatcccggtcgggccgggtcgcggttcc
ggtgccgggtcgctggtggcctgggcactcacgattaccgacctggacccgatgcgcttt
tcgctgctgttcgagcgctttctcaatccggaacgtgtgtcgatgccggatttcgatatc
gacttctgccagagccggcgtgaagaggtcattcgttacgtccaggaaaaatacggccgc
cagcaggtggcgcagatcattacctttggatcgcttcaggcccgggccgttctgcgcgac
gttggccgcgtgttgcagatgccttacggccaggtcgaccgtctgtgcaaactggtgccg
gcaaaccccgccaatccggtcacactggggcaggcgatcgaggatgaaccgcgcctgcgc
gaagcggcaagggaagaggagatcgtcgagcgtctgctcggcatggcgcagaagctggaa
gggctttaccgtcacgcctcgacccacgcggccggcgtggtgatcggtgaccgcccgctg
gaacagctcgtgccgctctatcgcgatccgcggtccgacatgccggtcgcccagttcaac
atgaagatggtcgaggaggccgggcttgttaagttcgactttctcgggctgaaaacgctg
accgtgatcgacacggccgtgaaactgatcgaacggcgcgggattaacgtggatgtcgcc
ggcctgcccatcgacgatctgaagacctatgaacttctcgcgcgcggcgagacgtttggt
gtgttccagctggaaagtcagggcatgcgccgggccatcgccggtatgaaaccggaccgg
ttcgaggacatcattgcgcttgtggcactctaccggccagggccgatggaaaacattccg
gtctataacgcggtgaaacacggcgaacaggagccggactgcctgcatccgctgctggag
ccgatcctgatggagacgaatggcatcatcgtctaccaggagcaggtgatgcagatcgcg
caggttctgtccggttattcgcttggtgaagctgaccttctgcgccgcgcgatgggcaag
aagattgccgctgaaatggaagtccagcgggcgcgttttgtcgacggcgccgttgagcgc
ggcatcaacaagacccaggcgggaacgatcttcgacctggtggccaaatttgccaactac
ggcttcaacaagtcgcacgcggccgcctatgcgctggtttcctatcacacggcctggctg
aaggcgaaccaccctgtggagttcatggctgcgtccatgacgctggatctcggcaacacc
gacaagctgggcgatttccgccaggaagcccggcgcatgggcatcgagatcgtgccgccg
tcgatcaacagatctcaggtctatttcgacgtcgccgatggccagatcctttacgccatg
ggcgccatcaagggggtcggtgagcaggcggtcgaacacatcgtcgaagtaaggggcgac
acgccgttcaagagcctcggggattttgcgcggcggatttcaccaagggcgctcaacaag
cgtacgcttgaaaacttggtggccgccggcgccttcgatgaactggagcccagcagagcc
aaggtgttcgagggccttgaccggatcatgggtctggcacagcgcagcgaggaaaacagg
acgctcgggcaggacgagctctttggcggcagcgacagcgaggaaccgcttcagctcgac
gaggtccatggctggaccaacgaggaaaagctgcagcgcgaacatgcagccatcggcttt
tatctctcggcacacccgatcgacgaatacgcgtcggtcctgaagaagatgcgggcgcag
ccctggacgcaatttgccgaagcggtcaaacagggggcttctcacggccggctggccggc
accgttgtgtcgatgcaggaacgcaagaccaagagcggcacacgtatgggcattgcccgg
ctctccgacgccaccgggcaatacgaggcgctgctgttccgggagaagctggaacagttc
cgggatgtgttgcaggccgggcgttcggttatcgttcttgtgggcgcggacatgcgcgat
gacgagccgtccttgcgcatcgagcaggtcgacccgatcgacaagatggctgcgcggctt
caaaagagcatgcgcgtcttcgtgcgcgacgagcgcccgatccagagcctcgccaaacag
cttcaggtgcgtggtgagggcgatgtcaccgtgatcgtgcttctggagaacggcgcgcgt
gaagtcgaggtcaagcttccaggcagattccgattgtctccggaaatcgctggggcgctg
aaggcggttccgggcgttacggacgttcagttggcctga
DBGET
integrated database retrieval system
