Labrenzia sp. VG12: CHH27_12260
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Entry
CHH27_12260 CDS
T04984
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
labr
Labrenzia sp. VG12
Pathway
labr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
labr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CHH27_12260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
labr03021
]
CHH27_12260
Transcription machinery [BR:
labr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CHH27_12260
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
DEXH1_3_5_N
Phage_DsbA
RNA_hel_CTD
Motif
Other DBs
NCBI-ProteinID:
ASP33919
LinkDB
All DBs
Position
complement(2616270..2618264)
Genome browser
AA seq
664 aa
AA seq
DB search
MVAKATQADDTQEQSGEGADGPLLDLSDAAVKKMIKAAKKRGYVTYDELNEVLPSEQVSS
EKIEDTMSMLSDMGINVIDSDEAEDGPEEVDGGELATTTTTAVAKTGNTKEPADRTDDPV
RMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEAQVLL
RDIIDLEATYAGPDAKAGPAVANDDVAPGEGEEKPASGETSENTENEEGEGDGEEDDDEF
ESNVSLSAMEAELKPGVLETFDNIADNYKKLRRLQDQLVENKLANKTLSPSQERRYKKLK
EDIIVDVKSLSLNQNRIDALVAQLYDINKRLMGYEGRLLRLADSYNVDRTDFLKQYQGAE
LDPNWLRKVANLSTRGWKNFIAKEKENVRELRQEIQTLATETGLEITEFRRIVAMVQKGE
REARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST
YATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLQM
PLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLA
SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRS
FLDS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggtagccaaagcgacacaagcagacgacactcaggaacagagcggcgaaggcgcggac
ggcccgctgctggacctgtcggatgctgccgtcaagaagatgatcaaagccgccaagaag
cgcggctacgtcacctatgacgaactcaacgaggttctgccgtcggaacaggtgtcttcg
gaaaagatcgaggacacgatgtccatgctgtccgacatgggcatcaacgtgattgactcc
gacgaagccgaagacggtccggaagaagtcgacggcggcgagctggcgaccacgaccacc
acggccgtcgccaagaccggtaataccaaggagccggcggaccggaccgatgacccggta
cgcatgtatctgcgcgagatgggctctgtggagcttctgtcccgcgagggcgaaattgcg
atcgccaagcggatcgaggccggccgcgaggccatgattgcaggtctttgcgaaagcccg
ctgaccttccaggcgattatcatctggcgcgacgaactcaacgaagcccaggtcctcctg
cgtgacatcatcgacctggaagcgacctacgccggcccggacgccaaggccggtccggca
gttgccaatgacgacgtggcaccgggcgagggcgaagagaagccggcttccggcgaaacc
tccgaaaacacggaaaacgaggaaggcgaaggcgacggcgaagaggatgacgacgagttc
gaatccaacgtctccctgtcggccatggaagccgagctgaagccgggtgtcctggaaacc
ttcgacaacatcgccgacaactacaagaagctgcgccgcctgcaggaccagctggtcgaa
aacaagctggccaacaagacgctctccccgagccaggagcgccgctacaagaagctgaaa
gaagacatcattgtcgatgtgaagagcctgtcgctcaaccagaaccgtatcgacgccctg
gtggcccagctctatgacatcaacaagcgtctgatgggctatgaaggccgtctgctgcgt
ctggccgacagctacaatgtcgaccgcaccgacttcctgaagcagtatcagggcgccgag
ctggatccgaactggctgcgcaaggtggcgaatctctccacccgcggctggaagaacttc
atcgccaaggaaaaggaaaacgtccgcgagctgcgtcaggaaatccagacgctggcaacc
gagacgggcctggaaatcaccgaattccgccgcatcgtggccatggtgcagaaaggcgag
cgcgaagcccgcatcgccaagaaggaaatggtcgaggccaacctgcgcctcgtgatctcc
atcgccaagaaatacaccaaccgcggcctgcagttcctcgacctgatccaggaaggcaat
atcggcctgatgaaggcggtcgacaaattcgagtaccgccgcggctacaagttctccacc
tatgcgacctggtggatccgtcaggcgatcacccgctcgattgccgaccaggcccgcacg
atccgtattccggtgcacatgatcgagacgatcaacaagatcgtgcgcacctcgcgtcag
atgctgcacgagatcggccgtgagccgaccccggaagagctggccgagaagctgcagatg
ccgctggaaaaggttcgcaaggttctgaaaatcgccaaggagccgatctcgctcgaaacg
ccgatcggcgacgaggaagattcccatctcggcgatttcatcgaggacaagaacgcggtt
ctgccgatcgatgcggcgattcagtcgaacctgcgcgagaccaccacccgcgtgctggcg
tcgctgacgccgcgcgaggagcgtgttctcagaatgcgtttcggcatcggcatgaacacc
gaccacacgctggaagaagtcggccagcagttctcggtgacccgcgagcgtatccgccag
atcgaggccaaggcgctccgcaagctgaaacacccgagccgctcgcgcaagctgcgctcg
ttcctggacagctaa
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