Labrenzia sp. VG12: CHH27_21435
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Entry
CHH27_21435 CDS
T04984
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
labr
Labrenzia sp. VG12
Pathway
labr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
labr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CHH27_21435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
labr03400
]
CHH27_21435
Enzymes [BR:
labr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CHH27_21435
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CHH27_21435
DNA repair and recombination proteins [BR:
labr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CHH27_21435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ASP35487
UniProt:
A0A222F8S2
LinkDB
All DBs
Position
complement(4630395..4631288)
Genome browser
AA seq
297 aa
AA seq
DB search
MPELPEVETVRRGLAPTFEGALITRVDQNRADLRFPFPENFVDRLTGRRLTALSRRSKYL
LGDIDSGDVLVMHLGMSGSFRIESGELGEVPGNFAHDRSKDPKHDHVVFHLETETGTQAR
ILYNDPRRFGFIDLIARPSLAEHPFFRDLGMEPLGNDLSGQTLANLFAGRKSNLKAALLN
QKLIAGLGNIYVCEALWRTGLSPERAAGSLVTKSGRPTKKAEALAANIRETLQDAIRAGG
SSLRDHTQADGTLGYFQHSFAVYDREGEPCRTPGCGGTIQRLVQSNRSTFHCPGCQT
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgccggaagttgaaaccgtcaggcgcggtcttgcgcccacctttgagggc
gcactcatcacccgggtggaccagaaccgggcggatctgcgcttcccctttccggaaaac
ttcgtcgatcgcctgacaggccgcaggctgaccgcgctgtcccgtcggtccaaatatctg
ctcggcgatatcgatagcggcgacgtgctggtgatgcatctgggcatgtccggctctttc
cggatcgaaagcggtgagctgggagaggtgcccggcaacttcgcgcatgatcgcagcaag
gaccccaaacacgatcatgtcgtgttccatctggaaacggaaaccggcacacaggcccgt
atactctacaatgacccacgccgcttcggcttcatcgatctgattgcccggccctcgctc
gcggagcacccgttcttccgcgaccttggcatggaaccactcggcaatgacctcagcggc
cagacgctggccaatctctttgccggtcgcaagagcaacctgaaggcggcgcttctcaat
cagaaactgatagcgggcctgggcaatatatatgtctgtgaagcgctctggcgcaccggg
ctcagcccggagcgtgcggccgggtccctggtcaccaaatcaggccggccgaccaaaaag
gccgaggcccttgccgccaacatccgggaaacgctgcaggacgccatccgtgcaggtgga
tcctccttgcgtgaccacacccaggcggacggcacactcggctatttccagcattccttc
gcggtttacgaccgggaaggcgaaccatgccgcacgccgggatgcggcggcacgatccag
cgtctggtccagtccaaccggtcgaccttccattgccccggctgccagacctga
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