Labrenzia sp. VG12: CHH27_21875
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Entry
CHH27_21875 CDS
T04984
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
labr
Labrenzia sp. VG12
Pathway
labr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
labr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHH27_21875 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
labr03019
]
CHH27_21875 (recQ)
03400 DNA repair and recombination proteins [BR:
labr03400
]
CHH27_21875 (recQ)
Enzymes [BR:
labr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHH27_21875 (recQ)
Messenger RNA biogenesis [BR:
labr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHH27_21875 (recQ)
DNA repair and recombination proteins [BR:
labr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CHH27_21875 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ASP37042
UniProt:
A0A222FEI1
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All DBs
Position
complement(4718084..4719973)
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AA seq
629 aa
AA seq
DB search
MSASPATTADELPSPVSPPAPPVHADPKPLAVLQQVFGYGSFRGKQQAVIETLVAGNDAV
VLFPTGAGKSLCYQIPALCRRGVGIVVSPLIALMKDQVGALTAAGVRAAAFNSTLSQDEQ
FSLRDALRRGEIDLLYVTPERLGLESFRSFLDTLDIALFAIDEAHCVSQWGHDFRPEYLS
LSCLKERYPGVPRVALTATADPHTQQDILARLQLEDAEVFSTSFDRPNIRYEIVERTNQR
QQLLDFLKKHEGESGIVYCLSRAKVEDIADWLTSKGVKALPYHAGLPAERRAANQDAFLL
EEGLCLVATVAFGMGIDKPDVRYVAHLDLPSSVEAYYQETGRAGRDGAPSEAFMAYGMAD
LVQRRRMIAEGDAPDEVKRAENAKLNALLGICETAGCRRQALLAHFGETYPEPCGNCDTC
LSPVETWDGTEAAQKLMSAIYRTGQRFGAGHVIDVLLGKSNEKTTRFGHENLSVFGIGED
VAQKTWQSIARQLVAAGFVDVDHAHFGALILTEKARSVLRGDERLALRKDRSAAGLKKTR
TSRTASIADELDHDDKLLFERLRRLRTQIARDQSVPPYVVFPDATLAGIAAARPVTPEAM
LAVSGVGQSKLEKYGETFLDVVEAFEAGV
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcttcgcctgcaaccactgcggatgaactcccatcccccgtctcgccccctgct
ccgcccgtccatgcggatccgaaaccgctcgcggttctgcagcaggtcttcggctatggc
agtttccggggcaagcaacaggccgtcatcgaaacgctggtcgccggcaacgacgcggtg
gtgctgttccccaccggggcaggcaagtcgctctgctaccagatcccggcgctttgccgc
cgcggtgtcggcatcgtggtctcccccctgattgccctgatgaaagaccaggtcggcgcg
ctcacggccgccggtgtcagggccgccgccttcaattccaccctgtcgcaggacgaacag
ttttcgctgcgcgacgccttgcgccgcggcgaaatcgatcttctctatgtcacgccggaa
cggctcggcctcgagagtttccggagctttctggacacgctggacatcgcgctgtttgcc
atcgacgaggcccattgcgtcagccagtggggacatgatttccgccctgaatacctgtct
ctctcctgcctgaaggaacggtatccgggcgtgccaagggtcgcgctgacggccacggcc
gatccgcatacacaacaggacattctggcccgactgcagctggaagacgcggaagtgttc
tccaccagtttcgaccggccgaacatccgctacgaaatcgtcgagcgcaccaatcagcgc
cagcagcttctggatttcctgaagaagcacgagggagaaagcggcatcgtctattgcctc
agccgggcgaaggtcgaagacattgccgactggctgacgtcaaagggtgtcaaggccctg
ccctatcatgccggcctgccggcggagcggcgagcggccaaccaggatgccttcttgctg
gaagagggtctgtgcctggtggcaacggttgccttcggcatgggcatcgacaagccggat
gtgcgctatgtcgcccatctggatctgccgtcttcggtggaagcctattaccaggaaacg
ggccgggcgggacgcgatggcgccccctctgaagccttcatggcctacggcatggccgat
cttgttcagcgtcgccgcatgattgcggaaggtgatgcaccggacgaggtcaaacgcgca
gaaaacgccaagctgaatgcgctgctgggcatctgcgagacggcaggctgccggcgccag
gcgcttctggcacatttcggcgaaacctatcccgagccctgcggcaattgcgatacctgt
ctgtcaccggtggagacctgggacggcaccgaagccgcgcaaaaactgatgtcagccatc
taccggaccggccaaaggttcggcgccggtcacgtcatcgatgtcttgctcggaaaaagc
aacgaaaagacaacccgtttcggacatgagaacctctccgtcttcggcatcggggaggat
gttgcgcaaaagacctggcagtccatcgccaggcaattggtggccgccggctttgtcgat
gtcgaccacgcccatttcggcgccctgatcctgaccgagaaggcccgatcggtgttgcgc
ggcgatgaaagactggccctgcgcaaggaccgcagcgcggccggactgaaaaagacccgc
acctcgcgaaccgcctcgattgcagacgaacttgatcatgacgacaagcttctgttcgag
cggctgcgccggcttagaacccagattgccagagatcagagcgtgccgccttacgtggtg
tttccggatgcgacacttgccggtatcgcggcggccaggccggtcacgccggaagccatg
cttgcggtttccggcgtcggccaatccaaactcgagaagtatggtgaaacatttctcgat
gtggtcgaagccttcgaggccggcgtgtaa
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