Labrenzia sp. VG12: CHH27_25380
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Entry
CHH27_25380 CDS
T04984
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10912
two-component system, repressor protein LuxO
Organism
labr
Labrenzia sp. VG12
Pathway
labr02020
Two-component system
labr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
labr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CHH27_25380
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CHH27_25380
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
labr02022
]
CHH27_25380
Two-component system [BR:
labr02022
]
Lux family
LuxQN/CqsS-LuxU-LuxO (quorum sensing)
CHH27_25380
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
Response_reg
AAA_5
AAA_16
AAA
Mg_chelatase
AAA_19
HTH_29
AAA_22
AAA_2
Motif
Other DBs
NCBI-ProteinID:
ASP36174
LinkDB
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Position
complement(5500768..5502267)
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AA seq
499 aa
AA seq
DB search
MGSNEGKELPAIVRVLDASASEAARTSAVCAKLSAACTDPILYTDSSSCLQDLADKSTDI
LIIDLETIGGEEALEAYAVRCPKSVIIAVSAKGSVSRAVSAMRSGAHDFLTKPFSLDALA
SKIMFQLEQRRPSSSTPQPAAVTVPASSAQRPIEAAAPQRLHADETPEKENRLIGVSVQM
RDVHDQIARMAPSQAPVFITGESGTGKELCANAVHSLSDRSDNRFVTLNCAAIPRDLIES
EIFGYVRGAFTGATDNRAGAAEQADGGTLFLDEIGEMDLLLQSKLLRFLQTGTFQRLGDT
SSRKVDARIICATNRNPVAEISAGRFREDLYYRLHVLPIHLPPLRERRDDILPLAEAFLL
RYSSEERRGFKGFDADAEARIVAYTWPGNVRQLENTIRQIVVMNDGAAVTYDMLPMVIRD
QSARPNAIIDLSRERTRSAPPSRPFGAIEPLWAQERRIIEDALDAFDGNIAMAAAALEIS
PSTIYRKRQAWSERLMQGA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggggagtaacgaaggcaaagagttgcctgcaattgtacgcgtgttggacgcatcggct
tccgaagccgcccggacatccgcggtttgtgccaaactgtcagccgcctgcacggatcca
attctctatacggactcttcttcctgccttcaggatctggccgacaagtcaaccgacatt
ctcatcatcgatctggaaacaatcggcggcgaagaggccctcgaggcctatgcagtccgt
tgcccgaaatccgtcatcatcgccgtctcggcaaagggctctgtctcccgcgcggtcagc
gccatgcgctccggcgcacatgactttctgaccaaaccgttttccctggacgcgctcgca
tccaaaatcatgttccagctggaacaaagacgtccctcgtcgagcactccgcaaccggcg
gccgtcaccgtgccagcttcgagtgcgcaaaggcccattgaggcagccgcaccgcagcga
cttcacgcagacgagacacccgaaaaagagaaccggctgatcggggtctccgtccaaatg
cgcgacgtccatgatcagattgcgcgcatggctccgtcccaggcgcccgtcttcattacc
ggcgaatccgggactggcaaggaactatgcgccaacgcagttcacagcctgtcggaccgg
agcgacaaccgtttcgtcacgctgaactgtgcagcgataccgcgggatctcatcgaaagc
gagattttcggctacgtgcgcggcgctttcaccggcgcgaccgacaaccgtgccggcgcg
gccgagcaggccgatggcggcacgctgtttctcgatgaaatcggcgaaatggacctgttg
ctacagagcaagctgctgcgttttctgcagacgggcacgttccagcgacttggcgacaca
agcagccgcaaggtcgatgcgcgcatcatctgcgccaccaaccggaacccggtcgcggaa
atctcagccggacggttccgcgaagatctttattaccgcctccacgtactgccaattcat
ctgccgcctttgcgtgagcgccgcgacgatattcttccgctcgccgaagctttcctgctg
cgctattccagcgaagaacggcgcgggttcaaaggctttgacgcggatgccgaggcgcgg
attgtcgcctatacctggcccggaaacgtgcgtcagctggagaacacgatccggcagatc
gtggtcatgaatgacggtgccgccgtcacttatgacatgctgccgatggtgatccgggac
cagagcgcacgcccgaatgccatcatcgacctttcccgggaacgtacgcgctcggcgcca
ccgagccgtcccttcggtgcgatcgagccgctctgggcccaggaacgacggattatcgag
gacgcgctggacgcttttgacggcaacatcgccatggcggccgccgcattggagatcagt
ccttcgacgatctaccgcaagcgtcaggcctggtccgagcggctgatgcaaggcgcgtaa
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