Labrenzia sp. VG12: CHH27_25965
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Entry
CHH27_25965 CDS
T04984
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
labr
Labrenzia sp. VG12
Pathway
labr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
labr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHH27_25965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
labr03019
]
CHH27_25965
Enzymes [BR:
labr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHH27_25965
Messenger RNA biogenesis [BR:
labr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHH27_25965
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASP36270
UniProt:
A0A222FC07
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All DBs
Position
5624698..5625996
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AA seq
432 aa
AA seq
DB search
MTDFQSLGLSDGLLSAVADNGYDAPTPIQQKAIPLILAGRDLMGLAQTGTGKTAAFGLPL
IDRLLAENEKAGPKGTRALILAPTRELVNQIAKNLISFLKHTPLRVASVVGGVSINGQIK
RLGKGTDILVATPGRLLDLVDRRAVDLGSASYLVLDEADQMLDLGFIHALRRIAGLVSDD
RQTLLFSATMPKQINELARSYLTDPERVEVSPAGKTADKITQSVHFMDRTKKSDFLVEQL
QAKPDGISLVFCRTKHGAERLMRKLSQSGIAAGSIHGNKSQNQRDRAIRDLREGRINVLV
ATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGDAIALCAPEEIGLFRQI
EKLIGIEIDVAGGEIPPMSAAAGRAKRGGGNRGGKPGGKKPFHKQSSSGDNDNKSQARRP
RRRRQGGRRDAA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgactttcaaagcctgggactttccgacggcttgctgtccgctgttgccgacaac
ggctatgacgcgccgacaccgatccagcaaaaagccattccgctgattctggccggccgg
gacctgatgggcctggctcagaccggaaccggcaagacggcagccttcggcctgccgctg
atcgaccgcctgctcgctgaaaacgaaaaggccggcccgaagggcacaagagccctgatc
ctggcgccgacccgcgaactggtgaaccagatcgccaagaacctgatttctttcctgaaa
cacacgccacttcgggtcgcgtccgtcgttggcggcgtgtccatcaacggccagatcaaa
cgtcttggcaaggggaccgatatcctggtggcaacaccgggaaggcttctggacctggtt
gaccggcgagctgtcgatcttggcagcgcctcctacctcgtgctcgacgaggccgaccag
atgctggatctcggtttcatccatgcactacgccgtatcgccggcctcgtctccgacgac
cgccagacgctgctgttctcggcaaccatgccgaaacagatcaatgagctggccaggtcc
tatctgacggacccggaaagagtggaagtctcacccgccggcaagaccgcagacaagatc
acccagtcggttcatttcatggaccggaccaagaagagcgacttcctggtcgagcaactg
caagccaagccggatggaatttccctggtgttttgccgcaccaagcacggtgcggaacgg
ttgatgcgcaagctgagccagtcgggcattgccgccggttccattcacggcaacaagagc
cagaaccagagggatcgtgcgatccgggacctgcgcgaaggccggatcaacgtgcttgtg
gccaccgacgtcgctgcccgcggcatcgatattccgggcgtcagccacgtttacaatttt
gaactgccggaagtggccgaagcttatgtgcaccggatcggcagaacggcccgtgccggc
gccgagggcgatgcaattgccttgtgtgccccggaggaaatcggcctgttccggcagatt
gaaaagctcatcggcatcgagatcgatgtggccggtggtgagattccgccgatgtcggcg
gcggctggccgggcaaaacgcggtggtggcaaccgtggtggcaagccaggcggcaagaag
ccgttccacaagcagtcttcctccggagacaacgacaacaagtcccaggcgaggcggccc
cgtcgccggcgccagggcggtcgcagggatgcagcctga
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