KEGG   Labrenzia sp. VG12: CHH27_25965
Entry
CHH27_25965       CDS       T04984                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
labr  Labrenzia sp. VG12
Pathway
labr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:labr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHH27_25965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:labr03019]
    CHH27_25965
Enzymes [BR:labr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CHH27_25965
Messenger RNA biogenesis [BR:labr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CHH27_25965
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_RecD HEM4 AAA_22
Other DBs
NCBI-ProteinID: ASP36270
UniProt: A0A222FC07
LinkDB
Position
5624698..5625996
AA seq 432 aa
MTDFQSLGLSDGLLSAVADNGYDAPTPIQQKAIPLILAGRDLMGLAQTGTGKTAAFGLPL
IDRLLAENEKAGPKGTRALILAPTRELVNQIAKNLISFLKHTPLRVASVVGGVSINGQIK
RLGKGTDILVATPGRLLDLVDRRAVDLGSASYLVLDEADQMLDLGFIHALRRIAGLVSDD
RQTLLFSATMPKQINELARSYLTDPERVEVSPAGKTADKITQSVHFMDRTKKSDFLVEQL
QAKPDGISLVFCRTKHGAERLMRKLSQSGIAAGSIHGNKSQNQRDRAIRDLREGRINVLV
ATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGDAIALCAPEEIGLFRQI
EKLIGIEIDVAGGEIPPMSAAAGRAKRGGGNRGGKPGGKKPFHKQSSSGDNDNKSQARRP
RRRRQGGRRDAA
NT seq 1299 nt   +upstreamnt  +downstreamnt
ttgaccgactttcaaagcctgggactttccgacggcttgctgtccgctgttgccgacaac
ggctatgacgcgccgacaccgatccagcaaaaagccattccgctgattctggccggccgg
gacctgatgggcctggctcagaccggaaccggcaagacggcagccttcggcctgccgctg
atcgaccgcctgctcgctgaaaacgaaaaggccggcccgaagggcacaagagccctgatc
ctggcgccgacccgcgaactggtgaaccagatcgccaagaacctgatttctttcctgaaa
cacacgccacttcgggtcgcgtccgtcgttggcggcgtgtccatcaacggccagatcaaa
cgtcttggcaaggggaccgatatcctggtggcaacaccgggaaggcttctggacctggtt
gaccggcgagctgtcgatcttggcagcgcctcctacctcgtgctcgacgaggccgaccag
atgctggatctcggtttcatccatgcactacgccgtatcgccggcctcgtctccgacgac
cgccagacgctgctgttctcggcaaccatgccgaaacagatcaatgagctggccaggtcc
tatctgacggacccggaaagagtggaagtctcacccgccggcaagaccgcagacaagatc
acccagtcggttcatttcatggaccggaccaagaagagcgacttcctggtcgagcaactg
caagccaagccggatggaatttccctggtgttttgccgcaccaagcacggtgcggaacgg
ttgatgcgcaagctgagccagtcgggcattgccgccggttccattcacggcaacaagagc
cagaaccagagggatcgtgcgatccgggacctgcgcgaaggccggatcaacgtgcttgtg
gccaccgacgtcgctgcccgcggcatcgatattccgggcgtcagccacgtttacaatttt
gaactgccggaagtggccgaagcttatgtgcaccggatcggcagaacggcccgtgccggc
gccgagggcgatgcaattgccttgtgtgccccggaggaaatcggcctgttccggcagatt
gaaaagctcatcggcatcgagatcgatgtggccggtggtgagattccgccgatgtcggcg
gcggctggccgggcaaaacgcggtggtggcaaccgtggtggcaagccaggcggcaagaag
ccgttccacaagcagtcttcctccggagacaacgacaacaagtcccaggcgaggcggccc
cgtcgccggcgccagggcggtcgcagggatgcagcctga

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