Labrenzia sp. THAF35: FIU93_00385
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Entry
FIU93_00385 CDS
T06351
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
labt
Labrenzia sp. THAF35
Pathway
labt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
labt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU93_00385 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
labt03019
]
FIU93_00385 (rhlE1)
Enzymes [BR:
labt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIU93_00385 (rhlE1)
Messenger RNA biogenesis [BR:
labt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIU93_00385 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QFT65212
LinkDB
All DBs
Position
complement(78829..80133)
Genome browser
AA seq
434 aa
AA seq
DB search
MTDFQSLGLSNGLVTAVTENGYDAPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPL
IDRLLLEKKRAVPKGTRALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIK
RLSKGTDILVATPGRLLDLVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVADK
RQTLLFSATMPKQINELAQSYLRNPERVEVAPAGKTADKVTQSVHFMDKNDKGDFLVDQL
RDKPDGLSLVFCRTKHGAERLMRKLAHSGISAGSIHGNKSQNQRDRAIKDLREGTINVLV
ATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAIALCAPEEIGLFRQI
EKLIGIDITVAGGEIPPMSAAAGRAKRGGNRNGNSKPGGKKPFRKQSSSGANDNASENRR
PPRRRRQNTRRDAA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgactttcaaagcctgggactctccaatggccttgtgactgccgttaccgaaaac
ggctatgacgctccgacaccgatccagcaaaaagccatcccgttgatcctggaaggccgg
gacctcatgggtctggcacagacgggtacgggcaagacggctgctttcggcctgccgttg
atcgaccggcttctcctggagaagaaaagagccgttcccaagggcacacgggcgcttatt
ctggccccgacccgcgaactggtgaaccagatcgctaagaacctgatttccttcctgaag
catacaccgctgcgggtttcctccgttgtcggtggtgtgtccatcaacggccagatcaag
cggctctcaaagggcaccgacattctggtggcaacaccgggccggctgctggacctggta
gatcgtgaagcgatcgacctgcgcaccgcttcctacctggtgctcgacgaagccgaccag
atgctcgatctgggcttcattcatgccctgcgtcggatcgcaggcctggtggccgacaaa
cgccagaccttgctgttttccgcgaccatgccgaagcagatcaacgagctggcacagtcc
tatctgcgcaacccggagagggtcgaagttgctccggccggcaagaccgctgacaaggtt
acccagtcggttcatttcatggacaagaacgacaagggcgacttcctggtcgatcagctt
cgtgacaagccggacgggctgtcgctggtgttctgccgcacaaagcacggtgcggaacgg
ctgatgcgcaagctggcgcattccggaatttccgctggctcgatccatggcaacaagagc
cagaaccaacgtgaccgcgcgatcaaggacctgcgggaaggcaccatcaacgtgcttgtg
gcaaccgatgttgccgctcgcggcattgatattccgggtgtcagccacgtttataacttc
gagctgccggaagttgcagaagcctacgttcaccgaatcggccgtacggcccgcgccggt
gcggaaggtgaggcgattgccctgtgtgctccggaggaaatcggtctcttccgccagatc
gagaagctgatcggaatcgacatcacggtcgccggtggtgaaattccgccgatgtccgcg
gctgccgggcgcgcaaagcgcggcggaaaccggaatggcaacagcaagccgggcggcaag
aagccgttccgcaagcagtcgtcctccggcgccaacgacaacgcgtccgaaaaccgtcgt
cctccgcgtcgccgtcgtcagaacacacgcagagatgcagcctga
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