Labrenzia sp. THAF35: FIU93_03900
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Entry
FIU93_03900 CDS
T06351
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
labt
Labrenzia sp. THAF35
Pathway
labt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
labt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU93_03900 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
labt03019
]
FIU93_03900 (pnp)
03016 Transfer RNA biogenesis [BR:
labt03016
]
FIU93_03900 (pnp)
Enzymes [BR:
labt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FIU93_03900 (pnp)
Messenger RNA biogenesis [BR:
labt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FIU93_03900 (pnp)
Transfer RNA biogenesis [BR:
labt03016
]
Prokaryotic type
tRNA degradation factors
FIU93_03900 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QFT65908
LinkDB
All DBs
Position
complement(829959..832088)
Genome browser
AA seq
709 aa
AA seq
DB search
MFDIHRVEVEWGGRPLVLETGKVARQADGAVMATYGETKVLATVVSAKSPKPGQDFFPLT
VNYQEKAFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSH
DLENAPDILAMVASSAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESSLDLVVA
GTNDAVLMVESEAKELNEDIMLGAVMFGHKGFQPVIDAIIKLAETAAKEPRELVLPDHSE
LFGKVKALAEAELVAAYKITSKTDRKNAVDAAKAKVVEALITNAAEGEAVESTVLGEQFK
KLEAEIVRGAILDTGTRIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGT
GEDEQFIDLLEGTVKSHFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMMPPH
HEFPYTVRVVSEVTESNGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKDGDRFAVL
SDILGDEDHLGDMDFKVAGTQDGITSLQMDIKIDGITEEIMKVALGQAKDGRIHILGEMS
KAITEARAELGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAKVNIEDDGTVKIA
SADGKAIKAAVNWINSIAAEPEVGMIYEGTVVKCVDFGAFVNFFGAKDGLVHISQLAPKK
VAKVTDVIKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKEIEKKEEAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatattcatcgtgtagaagtcgagtggggcggacgcccgctcgtcctcgaaacg
ggcaaggttgcccgtcaggccgacggcgccgtcatggcgacctatggcgaaacgaaggtt
ctggcgacggttgtttccgccaagtctccgaagccgggccaggattttttcccgctcacc
gtgaactaccaggaaaaggcatttgccgctggtaagatcccgggtggctacttcaagcgt
gaaggccgtccgtcggagcacgagacgctgacgtcccgcctgatcgaccgtccgatccgc
ccgctgttcgcagacggctacaagaacgacacccaggtggtcatcaccgttctgtcgcac
gatctggaaaacgctccggacatcctggcgatggtggcttcttccgctgctctgaccctg
tcgggcgttcccttcatgggtccgatcggcggcgcgcgcgttggctacatcaacggcgaa
tacgtgctgaacccgctggtcgacgacatgccggaatcctcgctggatctggttgttgcc
ggtaccaacgacgccgttctgatggttgaatccgaagccaaggaactgaacgaagacatc
atgctcggcgctgtgatgttcggccacaagggcttccagccggtgatcgacgcgatcatc
aaactggctgaaaccgctgccaaggaaccgcgcgagctggtcctgccggatcattccgag
ctgttcggcaaggtcaaggctctggccgaagccgagcttgttgccgcttacaagatcacg
tccaagaccgaccgcaagaacgcagtcgacgctgccaaggcgaaggtcgttgaagcgctg
atcaccaacgctgccgaaggcgaagccgtcgaaagcaccgttctgggcgagcagttcaag
aaactggaagctgaaatcgttcgtggcgcgatcctcgacaccggcacccgtatcgacgga
cgtgacctgtcgaccgtccgtgcgatctcttcagaagtcggcattctgccgcgtgcgcac
ggttccgcactcttcacccgtggtgaaacccagggcctggtcgttgccaccctcggcacc
ggcgaagacgagcagttcatcgatcttctggaaggcaccgtgaagtctcacttcatgctg
cactacaacttcccgccttactccgtcggtgaaaccggccgcatgggctccccgggacgc
cgcgaaatcggtcacggcaagctggcatggcgtgcaatcaacccgatgatgcctccgcat
cacgagttcccgtacaccgtccgcgtcgtttccgaagtcaccgaatccaacgggtcgtct
tccatggcaaccgtctgcggcacttcgctgtcgcttatggatgccggtgttccgctgaag
gcaccggttgccggtatcgccatgggcctgatcaaggacggcgaccgttttgcggttctg
tccgacatcctgggcgatgaagatcacctcggcgacatggacttcaaggtcgccggtacc
caggacggtatcacctcgctgcagatggacatcaagatcgacggtatcaccgaagagatc
atgaaggtcgctctgggtcaggccaaggacggccgtatccacatcctcggcgaaatgtcc
aaggccatcaccgaggctcgtgccgagctcggcgaacatgctccgcgcatcgaagtgatg
aagatcccggtcgacaagatccgtgaagtcatcggttcgggcggcaaggtcatccgcgaa
atcgtggaaaagaccggcgcgaaggtcaacatcgaagacgacggcaccgtcaagatcgca
tctgccgacggcaaggcgatcaaggccgccgtcaactggatcaactccatcgccgctgag
ccggaagtgggcatgatctacgaaggcaccgtcgtcaaatgtgttgatttcggcgcattc
gtgaacttcttcggtgcgaaggacggtctggtccacatctcccagctggctccgaagaaa
gttgccaaggtcaccgacgtgatcaaggaaggcgacaaggtctgggtcaagctcatgggc
ttcgacgagcgcggcaaggtccgtctgtccatgaaggttgtcgaccaggaaaccggcaag
gaaatcgaaaagaaggaagaagctgaataa
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