Labrenzia sp. THAF35: FIU93_18415
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Entry
FIU93_18415 CDS
T06351
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
labt
Labrenzia sp. THAF35
Pathway
labt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
labt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIU93_18415 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
labt03021
]
FIU93_18415 (rpoC)
03400 DNA repair and recombination proteins [BR:
labt03400
]
FIU93_18415 (rpoC)
Enzymes [BR:
labt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIU93_18415 (rpoC)
Transcription machinery [BR:
labt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIU93_18415 (rpoC)
DNA repair and recombination proteins [BR:
labt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIU93_18415 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QFT68770
LinkDB
All DBs
Position
3985783..3989982
Genome browser
AA seq
1399 aa
AA seq
DB search
MNHEVMNLFNQQAPAQTFDNIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERVLYFENYVVLEPGLTPLKQHQLLSEEDFIAAQDEYGEDAFTA
MIGAEAIREILMSMDLERESEKLRQEIAEATTELKPKKLAKRLKVIEAFMESGNRPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGFSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARTLMMSTNNILHPANGGPIIVPSQDIVLGLYYLSIMAEGEPGEGMVFGNTGEIHHALA
NKVITLHTKVKGRYRSIDAEGNPTSEIIETTPGRMLIAELLPKHHEVPFEVCNKLMTKKD
ISKMIDTVYRACGQKETVIFCDRIMQLGFKNACNAGISFGMDDMVIPDTKHKLVAETSSL
ATEYEQQYNDGLITQGEKYNKVVDAWAKCTDKIADEMMARIKAVQIDEETGRQKPMNSVY
MMSHSGARGSPQQMKQLAGMRGLMAKPDGSIIENPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIILEPDCGSTRGITVAPIVDAGNVIASLGMRVLGRT
TAEDVYNNQTGELLVPKGTLIDEKDVDAIEAAKVQQIKIRSVLTCETETGVCATCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFIESNVDGTIKIRNRS
VNRDSDGNLIAMVRNMSIVVIDSDGNERAVHRVAYGSKLHVDEGDAVKRGQRIAEWDPYT
RPMLAEVDGIVDFEDLVDGASVQETADEATGITKRVVIDWRSSQRGQDLKPAIVVKDEKG
SISKTDRGSDARLMLSVDAVLSVQPGASVKAGDVLARIPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRFGRDYKNKRRVIIEPAEEGVEPVEYLIPKGKHFHLQEGDAIE
KGEYILDGNPAPHDILAVKGVEALAAYLVNEIQEVYRLQGVTINDKHIEVIVRQMLQKVE
ITDPGDTEFFSGEQIDKIDFEEANRRAIDNARDPAKGVPVLLGITKASLQTRSFFSAASF
QETTRVLTDAAVNGKTDPLVGLKENVIVGRLIPAGTGGVMKRIRQIATHRDDLIQEAQRQ
QSSDSAAEGLLEDMTGAAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgaggtcatgaacctgttcaatcagcaggctcccgcacagaccttcgacaat
atccggatttcgcttgcgagcccggaaaagatcttgtcctggtctttcggcgaaatcaaa
aagccggagaccatcaactaccgtacgttcaagcctgagcgcgacggtctgttctgcgcg
cgtatctttggcccgatcaaggactacgaatgtctttgcggcaaatacaagcgcatgaaa
tacaaaggcgtcatctgcgaaaagtgtggcgttgaagtcaccctgtcgcgggttcgccgt
gagcgcatgggccacatcgaactggctgcgcctgttgcgcacatctggttcctgaagtcc
ctgccgagccgtatcggccttctgctcgacatgacgctgaaggatctggaacgcgttctg
tatttcgagaactacgttgttctcgagccgggcctgaccccgctcaagcagcaccagctt
ctgtcggaagaagacttcatcgccgctcaggacgagtatggcgaagatgccttcaccgcc
atgatcggtgccgaggcgatccgcgagatcctaatgagcatggatctggagcgcgagagc
gagaagctgcgtcaggaaatcgccgaggcgaccaccgaactgaagccgaagaaacttgcc
aagcgcctgaaggttatcgaagcattcatggaatcgggcaaccgcccggagtggatgatc
atgaccgtggttccggttatcccgccggatctgcgcccgctggtaccgcttgacggtggc
cgtttcgcgacgtccgatctgaacgatctctaccgccgcgtgatcaaccgtaacaaccgt
ctgcgccgcctgatggaactgcgtgctccggatatcatcatccggaacgaaaagcgcatg
cttcaggagtccgttgacgccctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggttattaccgtgggt
ccggaactgaagctgcaccagtgcggtctgccgaagaagatggcgcttgagctgttcaag
ccgttcatctattcgcgcctcgacgccaagggcttctcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaacgtccggaagtctgggacatcctcgacgaagtcatccgagag
cacccggttctcctgaaccgcgcgccgacgctgcaccgtcttggtatccaggccttcgaa
ccgacgctgatcgaaggcaaggccatccagctgcacccgctcgtctgctcggccttcaac
gccgacttcgacggtgaccagatggctgttcacgtaccgctttcgctggaagcccagctc
gaagcgcgtacgctgatgatgtcgaccaacaacattctgcatccggcaaacggtggcccg
atcatcgttccttcgcaggatatcgttctgggtctctactatctgtccatcatggcagaa
ggtgagccgggcgaaggcatggtcttcggcaacactggtgagatccaccatgcgctggcc
aacaaggtcatcacgctgcacaccaaggtgaagggccggtatcggtccatcgatgcagaa
ggcaatccgacttccgaaatcatcgagaccactccgggccgcatgctcatcgcggagctt
ctgccgaagcaccatgaagtgccgttcgaggtctgcaacaagctgatgaccaagaaggac
atctccaagatgatcgacacggtttaccgtgcctgcggtcagaaggagacggttatcttc
tgtgaccggatcatgcagcttggcttcaagaacgcctgtaacgccggcatctccttcggc
atggacgacatggtcattccggacaccaagcacaagctggtggccgaaacctcgtcgctc
gcgaccgaatacgagcagcagtacaacgacggtctgatcacccagggcgaaaagtacaac
aaggttgtcgatgcctgggcgaaatgtaccgacaagattgctgacgagatgatggcccgc
attaaggcggtccagatcgatgaggaaaccggtcgtcagaagccgatgaactcggtctac
atgatgtcgcactccggtgctcgtggttcgccacagcagatgaagcagctggccggcatg
cgcggcctgatggccaagccggacggttccatcatcgagaacccgatcatctcgaacttc
aaggaaggcctgtcggttctggagtacttcaactccacccacggtgcccgtaagggtctg
gccgataccgctctgaagaccgcaaactccggttacctgacccgccgtctggtggacgtc
gcccaggattccatcatcctggaaccggattgcggatccacgcgcggcatcaccgttgct
ccgatcgtcgatgccggtaacgtcatcgcttcgctcggcatgcgcgttctgggccgtacg
actgcggaagatgtctacaacaaccagaccggcgaactgcttgtccccaagggcacgctg
atcgatgagaaggatgttgatgccatcgaggctgccaaggttcagcagatcaagatccgc
tcggttcttacctgtgaaaccgaaaccggcgtctgcgcgacctgttatggtcgtgacctt
gctcgcggtacgcccgtgaacatgggtgaagctgtcggcgtcatcgccgcacagtcgatc
ggtgagcctggcacgcagctgaccatgcgtaccttccacattggcggtaccgcacaggtt
gtcgacagctcgttcatcgagtccaacgtcgatggcacgatcaagatccggaaccgttcg
gtcaatcgcgacagcgacggcaacctgattgccatggttcgcaacatgtccatcgttgtc
atcgacagcgacggcaacgagcgtgccgtgcatcgtgtggcctacggttccaagctgcat
gtcgatgaaggcgatgcggtcaagcgcggtcagcggattgccgaatgggatccgtatacc
cgtccgatgcttgctgaagtcgatggtatcgtggacttcgaggatctggtcgatggtgcg
tccgttcaggaaacggccgacgaagcgaccggcatcaccaagcgtgtcgtcattgactgg
cgttcttcgcagcgtggtcaggatctcaagccggctatcgtcgtcaaggacgaaaaaggc
agcatttccaagaccgatcgcggctccgatgcccgtctgatgctttccgttgacgcggtt
ctgtccgttcagccgggagcttcggtcaaggctggtgacgttctggcccgtattccgctg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgtgttgcggaactgttcgag
gctcgccgtccgaaggatcatgcgatcatcgccgaaatcgatggtacgatccgcttcggt
cgcgattacaagaacaagcgtcgcgtcatcatcgagccggcggaagaaggtgtcgagccc
gtcgaataccttatcccgaagggcaagcacttccatcttcaggaaggcgatgccattgaa
aagggtgagtacatcctcgacggcaacccggctccgcacgacatcctggcagttaaaggc
gtagaggcccttgcggcttacctcgtcaacgagatccaggaagtctaccgcctgcagggc
gtgaccatcaacgacaagcacattgaagtgattgtccgccagatgctgcagaaggtcgag
atcaccgatccgggcgatacggagttcttctccggcgaacagatcgacaagatcgacttc
gaggaagccaaccgccgggcgatcgacaatgcacgcgatcctgccaagggggtgccggtt
ctgctcggcatcaccaaggcatcgctgcagacgcgctcgttcttctccgccgcctccttc
caggagacgacccgcgtccttaccgatgcggctgtcaacggcaagaccgacccgctggtc
ggcctcaaggagaacgtcatcgtcggtcgcctgatcccggccggtaccggtggggtgatg
aagcggattcgtcagatcgcgacgcatcgcgacgacctgatccaggaagctcaacgtcag
cagtcttcggacagtgcagcggaaggccttctggaagatatgaccggtgcagccgagtaa
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integrated database retrieval system
