Labrenzia sp. THAF35: FIU93_19165
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Entry
FIU93_19165 CDS
T06351
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
labt
Labrenzia sp. THAF35
Pathway
labt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
labt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU93_19165 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
labt03019
]
FIU93_19165 (rne)
03009 Ribosome biogenesis [BR:
labt03009
]
FIU93_19165 (rne)
Enzymes [BR:
labt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FIU93_19165 (rne)
Messenger RNA biogenesis [BR:
labt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FIU93_19165 (rne)
Ribosome biogenesis [BR:
labt03009
]
Prokaryotic type
rRNA processing factors
FIU93_19165 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QFT68919
LinkDB
All DBs
Position
complement(4135421..4138243)
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AA seq
940 aa
AA seq
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MANKMLIDAGHPEETRVVVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADREALLAAEAADRQRDDSDGEEKPKRRRRSRAARNE
AAETVASDKVEADASEDTAEGDEEAVKATEDTDAVSEETSADETDGEGVSARSTDGDASD
EEEDEASSSEEEADEEEEAPVRSRGRGRGRRRQRQNDDDDDADNDVDAVESVGAEDAMEE
VPERIIPLRKQYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARG
GGISRKITQPTDRKRLKKIASELDVPEGMGVILRTAGASRTKAEIKRDFEYLMRLWENVR
ELTLKSSAPSLVYEEGSLVKRSIRDLYNKDINEVLVAGEEGYREAKDFMRMLMPSHAKNV
QPYRDPSPLFIRYGVEPQLDAMFSPQVTLKSGGYIVINQTEALVSIDVNSGKSTREHNIE
DTALQTNLEAAEEVTRQLRLRDLAGLIVIDFIDMEESKNNRSVERKLKDCLKNDRARIQV
GRISHFGLLEMSRQRIRTGVLESSTTPCPHCQGTGMIRSVESVALHVLRSVEDNLLKGAS
HNLIIRTTTQVALYILNQKRSNLVDLETRFAIDVEVHADDMVNGQLYVLERGAPVDRDRV
PMPVPAIVQPDTIEIIDEDTEQPDIEEFAQEDDNDGRRRRRRRKRRRGGSDNQQDDGESR
QVNAEADDADGDDEQPQEARSGGDEDGDDEPRRKRRRGRRGGRRGRRNGDDMQAEGGAEN
DGETNDETRDAASSEEQQDDQTGSEAVAVAESGQETEAAGAASQDGAQADEAKAVDGDTV
SDASGESPAEETAQQDGAAVPVEADAADETPVMAEAETIVVETPTSEQPIASEADADAEE
EAPARKAPAEPVVTSETSGDDDKEDKPKRGGWWQRGRSFF
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaaaatgctgatcgacgcgggccacccggaagagacccgggtcgtcgtcgtg
cgtggcaatcgggttgaagaattcgactttgaagcagctaatcggaagcaactgcgcgga
aacatatatcttgccaaggtaacccgggtcgaaccgtccctgcaggccgcattcgtcgaa
tatggcggaaatcgccacgggttcctcgctttcagcgaaattcaccctgactactatcag
atccctgttgccgaccgggaagcacttctggctgcggaagcagccgacagacagcgtgat
gattcggacggtgaagaaaaaccaaagcgccgccgccgctcccgtgcagcacgaaacgag
gctgctgaaaccgttgccagcgacaaggttgaggcggatgcctccgaagacaccgcagaa
ggcgacgaagaggccgtaaaggccacagaagatactgacgcagtttccgaagagacctct
gccgacgaaacggatggcgaaggcgtatcggcgcgcagcacagacggagacgcctccgac
gaagaagaagacgaagcatcctcttccgaggaagaagcagacgaagaagaagaggctccg
gttcgctcgcgtggccgcgggcgcggccgtcgccgccagcgtcagaacgacgatgacgat
gatgccgacaatgatgtcgatgccgtcgaatccgtcggcgcggaagatgcgatggaagaa
gttcctgagcgcattatcccgctgcgcaagcaatacaagattcaggaagtcatcaagcgc
cgccagatcattctggtgcaggtggtcaaggaagagcgcggcaacaagggcgccgcactg
acgacctacctgtcgctcgcaggccgctattccgtgctgatgccgaacaccgcccgtggc
ggcggcatttcgcgcaaaattacccagccgactgaccgcaagcgcctgaagaagatcgcc
tccgaactggatgtgccggaaggcatgggcgtgatcctgcgcaccgccggtgcaagccgg
acgaaggccgagatcaagcgcgacttcgaatacctgatgcggctttgggaaaacgttcgc
gagctgaccttgaaatccagtgctccaagcctcgtctacgaggaaggcagtctggtcaag
cgatcgatccgcgacctctacaacaaggacatcaacgaggtccttgttgcgggcgaagaa
ggctaccgtgaggccaaggacttcatgcgcatgctcatgccgagccatgcgaagaacgtc
cagccctaccgcgacccttcgccgctatttatccgctacggtgtcgaaccgcagctcgat
gcaatgttctcgccgcaggtaacgctgaagtccggtggttatatcgtcatcaaccagacc
gaagctctggtctcgatcgacgtgaactccggcaagtcaacccgcgaacacaatatcgag
gacaccgcgctccagacgaacctggaagcggcggaagaagtgacccgacagctacgcctg
cgcgatcttgccggtctgatcgtcatcgacttcatcgacatggaagagtcgaagaacaat
cggtcggtcgaacgcaagctgaaggattgtctgaagaacgaccgcgcccgcatccaggtt
ggccggatctcgcacttcggcctgctggaaatgtcgcgtcagcgcatccgcaccggcgtt
ctggaaagctcgaccacgccttgcccgcattgccagggcaccggcatgatccggtctgtg
gaatccgttgccctgcacgtgctgcgttcggttgaggacaaccttctgaaaggcgcgtcc
cacaacctgatcattcgcaccactacgcaggtagcgctctatatcctcaaccagaaacgt
tcgaacctggtcgatctggaaacccgcttcgccatcgatgtcgaagtgcatgcggacgac
atggtcaatggccagctctacgttctggagcgcggtgcaccggtcgatcgcgaccgtgtg
ccgatgccggttcctgcgattgtccagccggatacgatcgagatcatcgacgaagacacc
gaacagccggacatcgaggaattcgcccaggaagacgacaatgacggccgccgccggcgc
cgccggcgcaagcgccggaggggtggttccgataaccagcaggacgatggcgaatcgcgt
caggtcaacgccgaggcagacgacgccgacggcgatgacgagcagccgcaggaagcccgt
tccggtggtgatgaggacggtgacgatgaaccgcgtcgcaagcgccgccgtggacgccgt
ggtggtcgccgcggccgtcgcaacggtgacgatatgcaggccgaaggtggcgctgaaaac
gacggcgagaccaatgacgaaactcgggatgccgcttcctctgaagaacagcaggacgat
cagaccggttctgaagccgtagccgtcgccgaaagcggtcaggaaacagaagctgcgggt
gccgcatcacaggatggtgcccaggccgatgaggcaaaggccgtcgatggcgacacggtt
tcggacgctagcggcgaaagccctgcggaagaaactgcgcagcaggacggtgccgccgtt
cctgtagaggccgatgcggcagatgagacaccggtgatggctgaagctgaaaccatcgtg
gtcgaaacgccgacttccgagcagccgattgccagcgaagccgatgccgacgccgaagaa
gaagcacctgcgcgcaaggcgccggccgagcctgtcgtaaccagcgaaacatctggagac
gacgacaaggaagacaagccaaaacgcggcggctggtggcagcgtggccggtcgttcttc
tga
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