Labrenzia sp. THAF35: FIU93_19440
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Entry
FIU93_19440 CDS
T06351
Symbol
dnaE2
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
labt
Labrenzia sp. THAF35
Pathway
labt03030
DNA replication
labt03430
Mismatch repair
labt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
labt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIU93_19440 (dnaE2)
03430 Mismatch repair
FIU93_19440 (dnaE2)
03440 Homologous recombination
FIU93_19440 (dnaE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
labt03032
]
FIU93_19440 (dnaE2)
03400 DNA repair and recombination proteins [BR:
labt03400
]
FIU93_19440 (dnaE2)
Enzymes [BR:
labt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FIU93_19440 (dnaE2)
DNA replication proteins [BR:
labt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FIU93_19440 (dnaE2)
DNA repair and recombination proteins [BR:
labt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FIU93_19440 (dnaE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
T2SSK
CDC24_OB3
Motif
Other DBs
NCBI-ProteinID:
QFT68970
UniProt:
A0A9X7NQI5
LinkDB
All DBs
Position
4198171..4201674
Genome browser
AA seq
1167 aa
AA seq
DB search
MSATDPNNSLSSGSSENAGSEASGPGYVHLRVHSALSLLEGALPIKKLLDLAKADDQPAL
AIADTNNLFGAQEFATKAWGSGIQPIAACQLSVFFDDGLESGRRGEPALSDVVLLAMTEA
GYGNLMELSSRAFLDTETGLRPHVSSGYLLSKSEGVIILTGGVGGPIGAALLASRKDLAK
SRLETLADRFPGRCYVEIQRHGMEAERKTEDAFLDLAYEYGLPLVATNEAFFPKREDYEA
HDALICISEGRVLIEDDRRRLTPEHYFKSRAEMCALFADLPEALVSTVEIARRCSFRPLK
RAPILPRFAGADADPEEAEKAEAEELIRQAREGLQARLDAHGLAPGLEEKDYWDRLDYET
GIIERMKFPGYFLIVADFIKWAKGQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFE
RFLNPERVSMPDFDIDFCQTRREEVIRYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVL
QMPYGQVDRLCKLVPANPANPVTLGQAIEEEPRLREAAKEEEIVERLLGMAQKLEGLYRH
ASTHAAGVVIGDRPLEQLVPLYRDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDT
AVKLIERRGIDVDVAALPIDDEKTYKLLARGETFGVFQLESQGMRRAIAGMKPDRFEDII
ALVALYRPGPMENIPVYNAVKHGEQDPDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSG
YSLGEADLLRRAMGKKIAAEMEVQRARFVDGAVERGINKSHAGTIFDLVAKFANYGFNKS
HAAAYALVSYHTAWLKANHPVEFMAASMTLDLGNTEKLGDYRQECRRMKIEIEPPSINRG
QVYFDVADGKILYAMGAIKGVGEQAVEHIVEVRGDKPFKSLGDFARRISPKALNKRTLEN
LVAAGAFDELEPNRARVFEGLDRIMGLAQRTEENKTLGQDELFGGSDSEEPLQLDDVHGW
TNEEKLQREHSAIGFYLSAHPIDEYASVLEKMRAQPWSQFSEAVKKGASHGRLAGTVVSM
QERKTKTGNRMGIVRLSDATGQYEALLFREKLEQFRDALQAGRSVVVLVGADMRDDEPSL
RIEQVDPIDQVAARLQKSMRVFVRDERPIPSLAKQLQVRGEGDVTVIVLLENGAREVEVK
LPGRFRLSPEIAGALKAVPGVTDVQVA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctacagatcccaataattctctgtcttccggttcgtcagaaaatgccggcagt
gaggcaagcggtcccggctatgttcacctccgggtccattcggcgttgtcgcttctggaa
ggtgcgttgccgatcaagaagcttctcgacctcgccaaggccgatgaccagccggcgctg
gcgattgccgataccaacaatctgtttggcgcacaggaatttgcgaccaaagcgtgggga
tccggaattcagccgattgccgcgtgtcagctttccgtctttttcgacgatggacttgaa
agcgggcggagaggggaacctgcgctttcggacgttgttcttctcgccatgacagaagcc
ggttacggcaatctgatggagctgagttctcgggcgttcctcgacacggaaaccggtctg
aggccacacgtttcctccgggtatcttctatcaaagtccgaaggcgttatcattctgacc
ggtggtgttggcgggccgatcggggcagcgctccttgccagccgcaaggacctcgcaaaa
agccggttggaaacattggcggaccgttttcccggtcgttgctacgtggaaatccagcgc
catggcatggaagccgagcgcaagaccgaagacgcgtttctcgatctggcctacgaatac
gggctgccactggtcgccaccaacgaagccttctttcccaagcgcgaagactatgaagct
catgacgccctgatctgcatttccgagggcagggtgctgatcgaggacgaccgcagacgg
ctgacaccggagcactacttcaaaagccgcgcggaaatgtgcgcgctctttgcggatttg
ccagaggcacttgtctcaacggtagagattgcccggcgctgcagcttccgcccgttgaag
cgcgcgccgatcctgccccggtttgccggtgcggatgcggatccggaagaagcggagaag
gcagaagcggaagagttgatccgccaggcacgcgaaggattgcaggcgcgccttgatgcc
cacggactggcgccgggtcttgaggagaaggactactgggaccgtctcgactacgagacc
ggcatcatcgagcgcatgaagtttcccgggtacttcctgatcgttgccgacttcatcaaa
tgggcaaaagggcaggatattccggtcggcccgggtcgcgggtccggtgcggggtccctg
gttgcctggtccctgaccattaccgacctcgatcccatgcggttctcgctgctgttcgaa
cgcttcctcaatcctgaacgcgtttcgatgcctgacttcgatatcgacttctgccagacc
cggcgtgaagaagtgatccgctatgttcaggaaaaatacggccggcagcaggtcgcgcag
atcatcaccttcggatcgcttcaggcccgtgccgtgttgcgcgatgtcggccgcgtactg
caaatgccttatggccaggtcgaccggctctgcaaacttgttcccgccaacccggcaaat
cctgtaacgcttggtcaggcgatcgaggaggagccacgcctgcgcgaggcagccaaggaa
gaggaaatcgtcgagcggctgctgggcatggctcagaagctcgaaggcctttaccggcat
gcttccacgcacgcggcgggcgttgtcatcggtgacaggcctctggaacagctggttccg
ctctatcgagacccgcgttccgacatgccggttgcccagttcaacatgaagatggtggaa
gacgccggacttgttaagttcgacttcctcggcctgaagacactgacggttatcgatacg
gcggtgaagctgattgaacggcgcggtatcgatgtcgacgtcgcagccctgccgatcgac
gacgagaaaacctacaagctgctggcgcgcggcgaaacgtttggcgtgttccagctggaa
agtcagggcatgcgccgcgcgattgcaggcatgaaacccgaccggttcgaagacatcatt
gcccttgtggctttgtatcgtcccggaccgatggagaacatcccggtctacaacgcggtg
aagcacggcgaacaggacccggactgcctgcatccgctgcttgaacccatcctgatggag
acgaacggcattatcgtctaccaggaacaggtgatgcagattgcacaggttctgtccggc
tactctctcggtgaagctgaccttctgcgccgcgccatgggtaagaagattgccgcggaa
atggaagtccagcgggcgcgttttgtcgacggcgcggtggagcgtgggatcaacaagagc
cacgccggaacaatcttcgatcttgtggcgaagttcgccaactacggcttcaacaagtcg
cacgctgcggcgtatgcactggtctcctatcatacggcctggctcaaggcgaaccacccg
gtcgagttcatggccgcttccatgacgctggatctgggcaatacggaaaaactgggcgac
taccggcaggaatgtcggcgcatgaagatcgagatcgagccgccgtcaatcaaccgcggg
caagtctattttgacgttgccgacggcaagatcctctacgcgatgggcgcgatcaagggt
gtcggcgagcaggcggttgaacacattgttgaggttcggggcgacaagcctttcaagagc
cttggcgattttgcgcgtcggatttcacccaaggccctcaacaagcgaacgcttgaaaac
ctggtcgcagccggagcattcgatgagcttgagcccaaccgggcacgggtttttgaaggc
ctcgaccggatcatgggcctggctcaacgcaccgaggaaaacaagacgctcggccaggac
gagctttttggaggcagcgacagcgaagaacccttgcagctggatgatgtccatggctgg
acaaacgaagagaagctgcagcgggaacactcggcgatcgggttttacctgtcagcgcat
ccgatcgacgaatacgcctccgtgctggaaaagatgcgggcacagccgtggagccagttt
tcggaagcggtcaagaagggggcgtctcacggccggcttgccggcaccgttgtgtccatg
caggaacgcaagaccaagaccggcaatcgcatgggtatcgttcgcctgtccgatgctacg
ggccagtatgaggcgttgctcttccgtgagaaactcgaacagttccgggatgccttgcag
gctggacgttccgttgtcgtgctcgtcggggccgacatgcgcgacgacgagccctccctt
cgaatcgaacaggttgatccgatcgatcaggttgcagcccgtctgcagaaaagcatgcgt
gtctttgttcgcgatgaacgtccaatcccgagccttgcaaagcagttgcaggtgaggggt
gaaggtgacgtgacggtgattgtgcttctggaaaacggcgcacgggaagtggaggtcaag
ctccccggccggttccgcctgtcaccggaaattgcgggcgcgctcaaggcagtgccaggt
gtaacggacgtacaggtggcgtga
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