Labrenzia sp. THAF35: FIU93_23580
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Entry
FIU93_23580 CDS
T06351
Symbol
rnd1
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
labt
Labrenzia sp. THAF35
Brite
KEGG Orthology (KO) [BR:
labt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
labt03016
]
FIU93_23580 (rnd1)
Enzymes [BR:
labt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FIU93_23580 (rnd1)
Transfer RNA biogenesis [BR:
labt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FIU93_23580 (rnd1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QFT69787
UniProt:
A0A9X7NRB2
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Position
5057299..5058483
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AA seq
394 aa
AA seq
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MHVITKTKDLAAACQRLAAHDYVTVDTEFLRETTFWPKLCVIQMAGPDMAFIVDALSEGL
DLEPFFELMRDGNVTKVFHAARQDIEIIYHLGELIPAPLFDTQVAAMVCGFGDSISYDQL
VYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLRDAYQFLKANLAEQDRSHWVQD
EMQVLTSINTYRTDPEQAWKRLKLRVRKPVELAVMMEVAAWREREAQSRDVPRSRVIKDD
AIYELAAQQPQDAESLARLRTIPRGFERSKSADEILKAVRRAVSLPKNEMPKLPKGRQAP
DGSAAAVDLLKVLLKLVSEAHGVAAKVIATVDDLEKIAADDAADVAAMKGWRRELFGETA
LKLKRGEVALAFQDRQIVAIDQPRQANVESEAAE
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtgattacaaaaacaaaagatctcgccgctgcgtgccagcgtcttgccgctcat
gattacgtgactgtcgacacggagtttctccgtgagacaaccttttggcccaagctctgc
gtcatccagatggcagggcctgacatggccttcatcgtcgatgccctgtccgaagggctg
gaccttgagccctttttcgagcttatgcgcgacggcaatgtgacaaaagtttttcacgct
gcccgccaggacatcgaaatcatctatcatctgggagaacttatcccggccccgctgttc
gacactcaagtcgcggccatggtttgcggctttggtgattccatttcctacgaccagctt
gtctacaaggtgaccggagcccggatagacaagtcgtcccgcttcaccgactgggcccgc
aggccgctgacggcaaagcaactggattatgcgctggcggacgtcacgcatctgcgcgac
gcctatcagttcctgaaagcgaatctcgccgaacaggaccgcagccactgggttcaggac
gaaatgcaggtgctgacatccatcaacacctaccgtacggatcccgaacaggcctggaaa
cggctgaagcttcgggtgcgcaagccggttgaactggccgtaatgatggaagttgcagcc
tggcgcgaacgggaagcgcaatcacgcgacgttccgcgcagccgcgtcatcaaggacgat
gccatctatgagctcgcagctcagcagcctcaggacgcagaatcgctcgcgcgcctcagg
accattccgcgcggtttcgagcgttcaaagtccgcagacgagatcctgaaagccgtcaga
cgggccgtttcgcttcccaagaacgaaatgccgaaactgccgaaaggtcgacaggcaccg
gatggttcagcggccgctgtcgatctcttgaaggttcttctgaaacttgtcagcgaagca
catggcgttgctgccaaggtcatagccacggtggatgatctagaaaagattgccgcggat
gatgctgccgatgtggcagccatgaagggctggcggcgcgagcttttcggcgaaaccgcg
ctcaagctgaagcgcggcgaagtcgccctcgccttccaggatcgtcagatcgtcgcgatt
gatcagccgcggcaggcgaacgttgaatcggaagcggcagagtaa
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