Labrenzia sp. THAF35: FIU93_27275
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Entry
FIU93_27275 CDS
T06351
Symbol
rpoN2
Name
(GenBank) RNA polymerase sigma-54 factor 2
KO
K03092
RNA polymerase sigma-54 factor
Organism
labt
Labrenzia sp. THAF35
Pathway
labt02020
Two-component system
labt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
labt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FIU93_27275 (rpoN2)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FIU93_27275 (rpoN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
labt03021
]
FIU93_27275 (rpoN2)
Transcription machinery [BR:
labt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FIU93_27275 (rpoN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
QFT70517
LinkDB
All DBs
Position
complement(5863738..5865291)
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AA seq
517 aa
AA seq
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MAISTKLEMRQSQSLIMTPQLMQAIKLLQMSNLDLVAYVEAELERNPLLEKNDIAEGGGE
GDGGRDAAADAFGDGADNQTRQGDEPDTGDWMQNDLETGSEAIASRMDTDLGNVFPDEPG
VPASPDPALLKAGDSYKNAGSSGASEDYNLEAFVADEASLVTSLEEQMHLAIGDEADKLI
ATHLINSLDENGYLYLAFDETAEQLGVETERLESVLAILQTFEPAGVFARNLAECLKLQL
IDKNRYDPAMEALIDNIELLARRDLPGLRKVCGVDDEDLVEMIAEIRALDPKPGSLFGSA
LVQPVVPDVFVRPANDGTWAIELNSDTLPKVLVNQTYYAKVIKTARNETEKEYLTDSLQT
ANWLAKSLDQRARTILKVSTEIVRQQDGFLTYGIAHLRPLNLKTVAEAIGMHESTVSRVT
SNKFMATPRGIYELKYFFSSAISATVGGDAHSAESVRHRIKQMIDAEDPKSILSDDTIVK
ILKDDGVDIARRTVAKYREAMKIGSSVQRRREKNVRL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggccatttcaaccaagctggagatgcgacaaagtcagtcgctgatcatgacgccgcaa
ctgatgcaggcgatcaagctgttgcaaatgtccaatctcgatctcgttgcctatgtcgaa
gccgagttggaacgaaatccgcttctggaaaagaacgacatcgccgaaggcggaggcgag
ggggatggcggcagggacgccgctgcagacgcatttggcgatggcgcggacaatcagacc
cgtcagggcgacgagcccgataccggcgactggatgcagaacgatctggaaaccgggtcg
gaggccattgcctcacgcatggataccgacctgggcaacgtctttcccgacgagcccggc
gtgcctgcatcgccggacccggctcttctgaaggccggtgacagttacaagaacgccggc
agcagtggtgcttctgaagattacaatctggaggccttcgttgccgacgaagcctccctg
gtcacgtctcttgaagaacagatgcatctggcgatcggcgatgaagccgacaagctgatc
gcgacccacctgatcaactcgcttgatgaaaacggctatctctatctggctttcgatgag
acggcggagcagctcggggtcgaaaccgaacggctggaaagcgttctggccatcttgcaa
acctttgagcccgcaggcgtgtttgcgcgtaacctggccgaatgcctgaagctgcagctc
atcgacaagaaccgctacgatccggccatggaagcgctgatcgacaatattgaactgctg
gccagacgcgatctgccggggcttcgcaaggtttgcggtgtcgatgatgaggatctggtc
gagatgattgcggaaatccgcgcactcgatcccaagcccggcagtctcttcggatcggcg
ctggtgcagccggtggtgccggatgtcttcgtgcgcccggccaacgacggcacctgggcg
atcgagttgaattcggacaccctgccgaaagtgctcgtcaatcagacctattatgccaag
gtcatcaagacggcccgaaacgagacggagaaggaatatctcaccgactcgttgcagacg
gccaactggctggccaaaagccttgatcagcgcgcccgtacgatcctcaaggtatcgaca
gagattgtccggcagcaggacgggtttctcacctacggcatcgcccatttgcgtccgctc
aacctgaagaccgtcgcggaagcgatcggcatgcacgaatcgacagtcagccgggtgacg
tcgaacaaattcatggcgaccccgcgcggcatctacgagctcaagtacttcttctcttcc
gccatctccgcaacggtgggcggcgatgcccattcggcggagtcggtccggcaccggatc
aagcagatgatcgatgccgaagatccgaagtcgatcctttcggacgatacgattgtcaaa
attctgaaggacgacggtgtcgatattgcccgcaggacggtcgccaaataccgcgaagcc
atgaagatcggttcgtccgttcagcgccggcgtgaaaaaaacgtgcgactttaa
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