Lactobacillus acidophilus NCFM: LBA0285
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Entry
LBA0285 CDS
T00231
Name
(GenBank) RNA-polymerase DNA-directed beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lac
Lactobacillus acidophilus NCFM
Pathway
lac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LBA0285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lac03021
]
LBA0285
03400 DNA repair and recombination proteins [BR:
lac03400
]
LBA0285
Enzymes [BR:
lac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LBA0285
Transcription machinery [BR:
lac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LBA0285
DNA repair and recombination proteins [BR:
lac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LBA0285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AAV42178
UniProt:
Q5FM96
LinkDB
All DBs
Position
282722..286375
Genome browser
AA seq
1217 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDI
SPRLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAIRELLK
KVDLDKEVKNLKKELQTATGQKRTRAIRRLDILDAFKNSGNKPEWMVMDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRGIASNIKNAKRKIDREDDDIWDVLEDVIKERPVLLNRAPTLHR
LSIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDVVLGNYWLTQAERGREGEGMIFSSPAEATVAYENGDIHYHTIIGMS
ADAMPKKPWPKGHEHGIFITTYGKLVFNQLFPDDYFYVNEPTEKNLNDPLDAKYFLNEGE
DINSKINEVADDLIASPFKSSFLSDSIATIYKYYKVQRTSEYLDDLKELGYTSSTTSGIT
IGMNDVPEIGDKDEKVAKARKQVDVVSKQFRRGLITEQERHDRVISIWNACKDEIQNEIA
QIHSPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTDRGITVSAIMEGDEMIE
PLFDRLVGRFTAETVKDPETGEAIVGRDVMMDENMAHKICDAGVTHVKIRSILTCDTPHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRATISEVDGVIDSIQENPAEHTREITVKGKIDTRSYSVPYTASVAVSEG
DYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIADKHVEVLTRQML
QKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSIILSITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPIYRSMEPEADVKKPDSV
YSIADIEKQMKEKDKTK
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataagtttgaaagtatgcaaattggtcttgcatcacctaacaagatc
agaagctggtcgtatggtgaagttaagaagccagaaaccatcaactaccgtactttaaag
ccagaaaaagatggcttgtttgatgaaagaatttttggaccaactaaagattggtcatgt
gcttgtggtaagtacaagggtgttagataccgtggtatcgtttgtgaccgttgtggtgta
gaagttacttcttcaaaggtaagaagagaacgtatgggtcacattgaattagctgctcct
gtaactcacatttggtacttcaaaggtatcccatcaagaatgggattggtattggatatt
tctccaagattgcttgaagaagttatctactttgctgcgtatatcgtaattgatccaggt
gatactgaccttgaacctaagcaattgttaactgaagctgaatatcgtgaacaaaaagca
aaatacggtaatcgctttgaagctaagatgggtgctgaagctattcgtgaattgcttaag
aaggttgaccttgataaagaagttaagaatttgaagaaagaacttcaaactgcaactggt
caaaagcgtactcgtgcaattagacgtttagatattttggatgcatttaagaattctggt
aacaaacctgaatggatggttatggatgctgttccagttatcccaccagatcttcgtcca
atggttcaacttgaaggtggacgttttgcaacttcagatttgaacgatttatatagacgt
gtcattaaccgtaataatcgtttgaagagattacttgacttgaatgctccaaatattatc
gttcaaaatgaaaagcgtatgcttcaagaagctgtagatgctttgatcgataatggacgt
cgtggtcgtcctgttgttggaccaggtaaccgtccacttaagtcactttcacacatgctt
aaaggtaagcaaggtcgtttccgtcaaaacttgcttggtaagcgtgtagactattctggt
cgttcagttattgatgtttcaccaaaattgaagttctatcaatgtggtgttcctcgtcca
atggctttggaattgtttaagccatttgtaatgcacgaattggttaagcgtggtattgct
tctaacattaagaatgctaagcgtaagattgatcgtgaagatgatgatatctgggacgta
cttgaagacgttattaaggaacgtccagttcttttaaaccgtgcacctactcttcaccgt
ttgagtattcaagcatttgaacctgttttggtaccaggtaaatcaattagacttcaccca
ttagcttgtgaagcttacaatgccgacttcgatggtgaccagatggccatccacgtacca
ctttcagatgaagctgttgctgaatcacgtttgcttatgcttgcagctcaccatatctta
gctcctaaggatggtaagccaattgttactccatcacaggatgttgttttgggtaactac
tggttaactcaagctgaacgtggccgtgaaggcgaaggcatgatctttagttcaccagca
gaagcaactgtagcttacgaaaatggtgatattcactatcatactattattggtatgtca
gctgatgctatgcctaagaagccatggcctaagggacacgaacatggtattttcattact
acttacggtaagcttgtctttaatcaattgttcccagacgattacttttatgtcaatgaa
ccaactgagaagaacttgaatgatccattggatgctaagtacttcttaaatgaaggtgaa
gatattaatagtaaaatcaatgaagtggctgatgatttgatcgctagtccattcaagagt
agcttcttatcagattcaattgctactatttacaagtattacaaggttcaaagaacttca
gaatacttggatgacttgaaggaattaggttacactagttcaactacttcaggtattact
attggtatgaatgacgttcctgaaattggtgataaagatgaaaaggtagctaaagcacgt
aagcaagttgatgttgtttctaaacaatttagacgtggtttaattactgaacaagaacgt
cacgatcgagtaattagtatttggaatgcatgtaaggatgaaatccaaaacgaaattgct
caaatccactcaccacgtaacccaatttcaatcatggccgactcaggtgcccgtggtaac
atttctaactttactcagttagctggtatgcgtggattgatggccactcctaacggtggt
ttgttcgaaattcctgttacttcaaactttaaagaaggtttgtcagtattggaattgttc
atgtccactcacggtgctcgtaagggtatgactgatacagctttgaagactgctcagtca
ggttacttaactcgtcgtttggttgatgttgcacaggatgttattattcgtgatgatgat
tgtggtactgatagaggtattacagttagtgcaattatggaaggcgacgaaatgattgaa
ccattattcgatcgtttagttggtcgtttcactgctgaaactgttaaggatcctgagact
ggtgaagcaatcgttggtagagacgtaatgatggacgaaaacatggctcataagatctgt
gatgcaggtgtaactcatgttaagattcgttcaatccttacttgtgataccccacacggt
gtatgtcgtaagtgttacggtatgaaccttgctactggtgaagaagttgaagttggtgaa
gcagttggtactgttgcagcacaatcaattggtgaaccaggtactcagcttactttgaga
actttccacaacggtggggttgccggtgctgaagatattactcaaggtttgcctcgtgtt
caagaattgtttgaagcacgtaaccctaagggtcgtgcaaccatttctgaagtagatggt
gtaattgattcaattcaagaaaatccagcagaacatactcgtgaaattactgttaagggt
aaaattgatactagaagttacagtgttccttatactgcttcagttgctgtatctgagggt
gattatgttcaccgtggtgataagttaactcttggttctgttgaccctaaggaattaatc
caagttactgatactttaactactgagaagtatattttggctgaagttcaaaaggcctac
agaatgcagggtgtagatatcgctgacaagcacgtcgaagtattgactcgtcaaatgctt
caaaaggttcgtgttcttgatccgggtgaaactgacatcttaccaggtgaagttatggat
atcggtcaatttagagaccgtaataaggaagtaattatctctggtggtattcctgcaact
gctcaaagtattatcttaagtattactaaggctgctttggaaactaacagtttcttgtca
gctgcttcattccaagaaactactcgtgttcttactgatgcttcaatcagaggtaagaat
gatccgcttcttggtcttaaggaaaatgttatcatcggtaaaattattccagctggtact
ggtatgccaatttaccgtagcatggaacctgaagctgatgttaagaaaccagattcagta
tactcaattgctgatattgaaaagcaaatgaaagaaaaagataagactaagtaa
DBGET
integrated database retrieval system
