Lactobacillus acidophilus NCFM: LBA1196
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Entry
LBA1196 CDS
T00231
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
lac
Lactobacillus acidophilus NCFM
Brite
KEGG Orthology (KO) [BR:
lac00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LBA1196 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lac03021
]
LBA1196 (rpoD)
Transcription machinery [BR:
lac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LBA1196 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-ProteinID:
AAV43032
UniProt:
Q5FJU2
LinkDB
All DBs
Position
complement(1171021..1172091)
Genome browser
AA seq
356 aa
AA seq
DB search
MVKQVVKDVKKDKSITEDDFTARLIKPYNLQGKAVDQLVQEFEDNGISIVDENGDPSKLA
LKKQKDVEKAELKDMSAPSSVRMNDPVRMYLKEIGRVPLLTADQEIALAKRIESGDEEAK
QELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYATWWIR
QAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPTNKVRD
ILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREE
NVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFMD
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagcaagtcgttaaagatgttaagaaggataagtcaattactgaagatgacttt
actgctcgtttgattaagccttataatttacaaggtaaggctgttgatcaactagtacaa
gagtttgaagataatggtattagtattgttgatgaaaacggtgatccttcaaaattagct
ttaaagaagcaaaaagatgttgaaaaagctgaattgaaagatatgtcggctccttcaagt
gtacgaatgaatgatcctgtaagaatgtacttgaaggaaattggtcgtgttccgcttctt
actgctgatcaagaaattgcacttgctaagagaattgaatctggagacgaagaagcaaaa
caagaattagctgaggccaaccttcgtttggtagtttctattgctaagcgttacgtaggt
cgtggaatgtcatttcttgatttaattcaagaaggtaatatggggctaatgaaagccgtt
gataaattcgattatcgtcttggattcaagttctcaacttatgcaacttggtggattaga
caggcaattactcgtgctattgctgatcaagctcgtacaattagaattcctgtgcatatg
gttgaaactatcaataagttgattagaattcaacgtcaattattgcaggatttaggtcgt
gaaccaaccccagaagaaattggtgctgaaatgaatatgccaaccaataaagttcgtgat
attcttaaaattgcccaagaaccagtttctcttgaaacacctatcggtgaagaagatgat
tcacatttgggtgactttatcgaagataaagacgctacaagtccagaacaacatgcttca
tacgaaatgctcaaggagcaactcgaacaagtacttgaaacattaactgaccgtgaagaa
aatgttttacgtttacgtttcggtctggatgatggtcgtactcgtacgcttgaagaagtg
ggtaaggtatttggcgtaactcgtgagcgtattcgtcagattgaagctaaggcattgcgt
aaacttcgtcatccaagtcgttctaatcaattacgtgactttatggattaa
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