Lactobacillus acidophilus NCFM: LBA1549
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Entry
LBA1549 CDS
T00231
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase Fpg
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lac
Lactobacillus acidophilus NCFM
Pathway
lac03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LBA1549 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lac03400
]
LBA1549 (mutM)
Enzymes [BR:
lac01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LBA1549 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LBA1549 (mutM)
DNA repair and recombination proteins [BR:
lac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LBA1549 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn-ribbon_8
Zn_Tnp_IS1595
Auto_anti-p27
NFACT_N
zinc-ribbons_6
OrfB_Zn_ribbon
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
AAV43366
UniProt:
Q5FIV8
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All DBs
Position
complement(1537335..1538165)
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AA seq
276 aa
AA seq
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MPEMPEVETVRRTLLPLIKGKTIEKVVLWYPTIVATDHDEFLKELPGKKIIGIDRYAKYL
LIRLSDNLTIVSHLRMEGKYHLTTEDAPKDKHDHVEFVFTDKTALRYNDVRKFGRMQLII
TGTERQVTGIKKLGPEPNTSEFSQQYLIDNLKKKHKNIKNVLLDQTTVAGLGNIYVDETL
WQSKIHPLSIANKIPAKKVAGLWENINQTIALAIEKRGTTVHSYLDANGEVGGYQEMLQV
YGHVGEECPRCGNIFEKIKVSGRGTTFCPHCQVIYK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagatgcctgaagttgagacagttcgtagaacattattgcctttaattaaaggc
aagacgattgaaaaggtagttttatggtatccaacgattgtggctacagatcatgatgaa
tttttgaaggaattacctggtaaaaaaatcattggaattgatcgttacgccaaatatttg
cttattcgattaagcgataatttgacgattgtatcgcatttgcgcatggaggggaaatat
catctaactactgaagatgcgccaaaagataagcatgatcatgtagagtttgtttttaca
gataagactgcattgcggtataatgacgttcgtaaatttgggcgaatgcagttaatcatt
actggcactgaacgtcaagtgacagggataaagaaattagggcccgaacctaatacgtct
gagtttagtcaacaatatttaatcgataatctaaaaaagaaacataaaaatatcaaaaac
gttttactcgatcaaactacggtggcaggattaggtaatatttatgtcgatgaaacttta
tggcaaagtaaaattcatccattaagtattgctaataagattcctgctaaaaaagtagct
ggtttatgggaaaacattaatcaaacaattgcgctagcaatcgaaaaacgggggacaact
gtccatagttatctagatgctaatggagaagttggtggttatcaagaaatgctacaagtg
tatgggcatgtaggcgaagagtgtccacgttgtggcaatatttttgaaaagattaaagtg
tcgggaagaggaacaacattttgtcctcattgtcaggtgatttataaatga
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