Lactobacillus acidophilus NCFM: LBA1550
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Entry
LBA1550 CDS
T00231
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lac
Lactobacillus acidophilus NCFM
Pathway
lac03030
DNA replication
lac03410
Base excision repair
lac03420
Nucleotide excision repair
lac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LBA1550 (polA)
03410 Base excision repair
LBA1550 (polA)
03420 Nucleotide excision repair
LBA1550 (polA)
03440 Homologous recombination
LBA1550 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lac03032
]
LBA1550 (polA)
03400 DNA repair and recombination proteins [BR:
lac03400
]
LBA1550 (polA)
Enzymes [BR:
lac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LBA1550 (polA)
DNA replication proteins [BR:
lac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LBA1550 (polA)
DNA repair and recombination proteins [BR:
lac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LBA1550 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBA1550 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
DUF61
Polysacc_deac_2
HHH_2
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AAV43367
UniProt:
Q5FIV7
LinkDB
All DBs
Position
complement(1538174..1540834)
Genome browser
AA seq
886 aa
AA seq
DB search
MADKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAILKQVDPTNIL
VAFDAGKVTFRTAMYKDYKGGRQKTPSELLEQMPVIREMLTDLGITSYELKNYEADDIIG
TLSKMGEDAGYEVTVVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGITPTE
FIDMKALMGDNSDNYPGVEGIGPKTASNLIQKYGSVENLYDHIDDLKKSKRKERLIRDKD
KAFLAKKLAAIDRESPVTVTLEDTIKKDPNYEKLRDLYERLGFRKFLAELNLETAGEDSG
DTENYDYVELTEDNVAELDDLKENEISFYLEMLGDNYHLAPFEGFSLKVGDKVYVSKDIA
LLQEKPLKDILENRKIQKDVFDLKRMTVGLHRLDVIVEGLNYDMLLASYLVNNEKNSNDL
GEIAHLYDEYSIKTDLEVYGKGKKQAIPEDKEFFKHLAAKVCVIEKLKPELLKQLKEHEQ
DDLFETIEIPTARVLAKMEINGIKVEASTLIELQNEFAVKLKELEDKIYKQAGEEFNLNS
PKQLGHILFEKLNLPVLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKG
LLDVIQRDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFS
CDYSQVELRVLAHVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKAVNF
GIVYGISDYGLSKNLGISRKRAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRR
RYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHD
ELIFDVPKDELETIKKIVPEIMQSAVKLDVPLIADSGWGHNWYDAK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcagataaaaaattacttctaatagatggaaattcagttgcttttcgtgccttttat
gctttgtatcggcaacttgatcgctttactagtccagatgggttgcacactaatgcgatt
tttacctttaaaaacatgttggatgccattcttaaacaagtagatccaactaatatctta
gttgcttttgatgcgggcaaagttactttcagaactgccatgtataaagactacaagggc
ggcagacagaagacacctagtgaattgcttgaacaaatgcctgttattcgtgaaatgtta
acggatttagggattacaagctatgaactgaagaattatgaagccgacgatattattggt
actttatcaaaaatgggtgaagatgctggctacgaagttacagtagttaccggtgaccgt
gacttaactcaacttgcttcagacaagactacagttttgatcactaaaaatggtgtgggt
gacaccgaagcctacacgcctgaacacatgaaggaagttaacggcataactccaaccgaa
ttcattgatatgaaggctttgatgggtgataactccgataattatcctggtgttgaaggc
attggccctaagacagcttctaatttgattcaaaagtatggttcagtagagaatctttat
gaccacattgacgatttgaagaagtctaagcgtaaagaacgtttaattcgtgataaggat
aaggcatttttagctaaaaaacttgccgctattgaccgtgaatcaccagttacggttact
cttgaagacacgattaaaaaagatccaaattatgaaaaattgcgtgatctttatgaaaga
ttaggctttagaaaatttttagctgaattgaatctagagactgctggtgaagattctggt
gataccgagaattacgattacgttgagctgactgaggataatgttgctgaattagacgac
ttgaaagaaaatgagataagtttttatcttgaaatgcttggcgataattatcatttagca
ccatttgaaggttttagcttgaaggtgggcgataaagtttatgtctcaaaagatattgct
ttattacaagaaaagccacttaaagatatccttgaaaataggaaaattcaaaaggatgtc
tttgacctaaagcggatgactgttggtttacatcgactagacgttattgttgaaggactc
aactatgatatgcttcttgcttcatatttggtcaataatgaaaagaactctaatgactta
ggtgaaattgcccacctttatgatgaatattcaatcaagacggaccttgaagtatatggt
aaaggtaagaaacaagcaatcccagaagataaagaattcttcaagcacttagccgctaaa
gtatgtgtaattgaaaaacttaaaccagagttacttaaacaactcaaagaacatgaacaa
gatgatttgtttgaaaccattgagattccaactgctcgtgttttggctaaaatggaaatt
aatggtatcaaggtggaagcaagtacattaattgaattgcaaaatgaatttgccgttaaa
ttaaaggaacttgaagacaaaatttataaacaagctggcgaagaattcaatttaaattct
cctaagcaattaggtcatattttatttgaaaaattgaatttaccagtattgaaaaagaca
aagacaggttactcaacttccgttgaagtccttgatcaattaaaaacacagagtccaatc
gtgagcgagattttggattatcgtcaaattgccaaaattcaatctacttatgttaaggga
ttacttgatgtaattcaacgagatggtcgtgttcacacccgttatctgcaaactttaaca
gctactggacgtttatctagtgttgatcctaacttgcagaatatccctactcgtacagaa
gagggtaagcaaattagaaaggcttttgtacctagtgaacctgatggctatatcttttct
tgcgactattcacaagttgaacttcgtgttttagcccatgtttcaggtgatcaaaacatg
caagaagccttcaagactggctatgacattcacgctcataccgcaatgaggattttccat
ttggactcaccagatgaagtaacgccacttatgcgtcgtcacgctaaggccgttaacttc
ggtatcgtttacggaatttcagattatggtttgtcaaagaatttaggcatttctagaaag
cgtgccaaagaatttattgataattactttgaacaatatcctcaaatcaaggactatatg
gataaggcagtccaagaagcacgtgaaaagggctatgccgaaactattatgcatagacgt
agatatttgccagatatccatgctaaaaaattcactgtccgttcatttgcggaaagaaca
gcaattaattcaccaattcaagggtctgcggccgatattattaagattgcgatgattaat
atgcaaaagaaacttgatgaattgcatcttaaaactaaaatggtaattcaggttcacgac
gaattaatttttgatgttccaaaagatgaacttgaaacaattaagaagattgttccagaa
ataatgcaatcagcagttaaattggatgttcctttaattgccgattcaggttggggacac
aattggtatgatgcaaagtag
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integrated database retrieval system
