Ligilactobacillus acidipiscis: LAC1533_0762
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Entry
LAC1533_0762 CDS
T05349
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
laca
Ligilactobacillus acidipiscis
Pathway
laca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAC1533_0762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laca03019
]
LAC1533_0762
03009 Ribosome biogenesis [BR:
laca03009
]
LAC1533_0762
Enzymes [BR:
laca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAC1533_0762
Messenger RNA biogenesis [BR:
laca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAC1533_0762
Ribosome biogenesis [BR:
laca03009
]
Prokaryotic type
rRNA helicases
LAC1533_0762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
LidA_Long_CC
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
SFV40182
UniProt:
A0A0R2K4C4
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All DBs
Position
I:837466..838977
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AA seq
503 aa
AA seq
DB search
MKFSELGLDADILKAIKRSGFEEATPIQEETIPLVLKRKDVIGQAQTGTGKTAAFGLPII
QNIDTSKRQIQAVIISPTRELAIQTQEELFRLSKDKHGKVQVVYGGADIRRQIQNLKNAP
QILVGTPGRLLDHIRRKTVDLSHVRSLVLDEADEMLDMGFLEDIESIISSVPKERQTLLF
SATIPKQILKIGEKFMTDPSVVKIKSKELTTDLVDQYYVKAREFEKFDTMTRIIDVQAPE
LTIIFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMTIMNKFKAGKLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGVSVTFVTPNEMDYLRVIEHLTKK
RMLPLKPPTEKEAFIGQVSSAFDDVQELIDDPDSVKYEDQAEQLLEKYDAKQIAAALLND
LTKDDAQNVPVKITPERPLPHKKGRRSSGGYHRGGRGGGKYNGRQQHGRKGGSNSNRYSH
KDRARKRYDRDQSSKRKYTIRKK
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttagtgaattaggtttggatgctgatatattaaaagcaatcaaacgcagcggt
tttgaggaagctacaccgattcaggaggaaaccattccgctggttttaaaaagaaaagac
gttattggacaagctcaaacagggacaggtaaaactgcggcctttggtttgccgatcatt
caaaatattgatacatcaaaacgtcagattcaagcagtaattatttcgccaactcgtgaa
ttagctatccaaactcaagaagaattattccgtttgagtaaggataagcatggtaaagtg
caggtcgtctatggtggtgctgatatcagacgacagatccagaacttaaagaatgctcca
cagatcttggtcggaacacccggacgtttattggatcatattcggcgcaagacggttgat
ttaagtcatgttcgatccttagttttggatgaggctgatgaaatgttagacatgggattt
ttagaagatattgaatctattatttcttcagttcctaaggaaagacaaaccttgttgttc
tctgccacaattcctaagcagatcttaaagatcggcgagaagtttatgacagatccaagt
gttgtcaagatcaagtctaaggaattaacaactgacttagttgatcaatactatgttaaa
gcacgtgaatttgaaaagtttgatacgatgacaaggatcatcgatgtccaggcacctgaa
ttaacgattatttttggccggactaagcgacgggtcgatgagttgtccaaaggacttgag
gcacgcggttataatgctgcagggattcatggtgacctcacacagcaacgacggatgact
attatgaataagttcaaggctggtaaattggacattttagtagctactgatgtggctgct
cgaggcttggatatttccggagttacacatgtctataattatgatatcccacaagatcct
gaaagctatgttcaccggatcggccggacaggtcgtgcagggcatcatggtgtttctgta
acattcgtgaccccaaatgaaatggattatttgcgtgttattgagcatttaactaaaaaa
cggatgctgccgttgaaaccaccaacagaaaaagaagcatttattggccaggtttcttca
gcatttgatgatgttcaagagttgatcgatgatcctgattctgttaagtatgaagatcag
gccgaacagcttttagaaaaatatgatgctaaacagatcgcagcggctttattgaatgat
cttactaaagacgatgcacaaaatgtgcccgttaagatcactccagaacgtcctttacca
cataagaagggccgtcgttcgtctggcggttatcatcgtggcggtcgcggcggcggtaaa
tataatggccgtcagcagcatggtcgcaagggtggtagcaacagtaatcgatacagccac
aaggatcgcgcacggaaaagatatgatcgtgatcaatcttctaagcgcaaatatacgatc
agaaagaaataa
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