Ligilactobacillus acidipiscis: LAC1533_1203
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Entry
LAC1533_1203 CDS
T05349
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
laca
Ligilactobacillus acidipiscis
Pathway
laca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAC1533_1203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laca03019
]
LAC1533_1203
03400 DNA repair and recombination proteins [BR:
laca03400
]
LAC1533_1203
Enzymes [BR:
laca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAC1533_1203
Messenger RNA biogenesis [BR:
laca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAC1533_1203
DNA repair and recombination proteins [BR:
laca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LAC1533_1203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
AAA_22
TPR_IPO5
Motif
Other DBs
NCBI-ProteinID:
SFV40623
UniProt:
A0A1K1KP03
LinkDB
All DBs
Position
I:1321672..1323132
Genome browser
AA seq
486 aa
AA seq
DB search
MSTNKELYAYLKETFGFSTFKPGQKDVITNLLKARSTVAVLPTGTGKSLCYQFFGKYTQQ
TVLVVSPLLSLMQDQVEQLRLNGEKRVVAINSNLKFQEKQQVLKSLGQYSFIYLAPEMLR
NEDVIKAFDHIKIGLLVIDEAHCISAWGPDFRPDYLQLGKIRHRLGDPLTLAVTATATNR
VLKDIVTLLRLPANAQVVKHSVDRPNIFLAAEKTINENDKNQHLIKLVQKLRAPGLVYFS
SKKQCDKVCELLKNKTGLRVGSYHAGLSFSERYAVQQQFLSGRLDLICATSAFGMGINKS
DIRFVIHYHMPQDLESYVQEIGRAGRDGKQSIAIILFSENDQFLQRRLAFSSLPNADELE
TYQKFPELLEKMSRENESAELVLRYQQMGIDFTQMSHIFAQRRTEKLQAIQQMLTYVNLE
NCKRNFILNYFDEDQHVKHDNKCCQLAEQSLDLRLLFGSQPSPIKHQKNDSPKSYQTILK
KLFNNY
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
ttgagtacaaataaagaactatatgcgtatttgaaagaaacttttggcttttcaactttt
aaaccgggacaaaaagacgtgatcactaacttgcttaaagccagatctacggtcgcagtt
ttgcctactggaacgggtaaatcgttatgttatcaattttttggtaaatatacccagcaa
actgttctggtcgtttctcccttgttgtcgttgatgcaagatcaagttgagcagttgcga
ctaaatggcgaaaagagagttgttgctattaattctaatttaaaatttcaagaaaaacag
caagtattgaagagtctgggacaatactcatttatttatttagctcctgaaatgttgcgt
aatgaagatgtgatcaaggcttttgaccatattaagattggtctactggtaatcgatgaa
gcccattgtatttctgcttgggggcccgatttccgtccagattatttgcaactaggcaaa
atcagacatcgattaggggacccgctaactttagccgttacagccacagcaactaataga
gtcttaaaagatattgtcacactactaagactccccgctaatgctcaagtggtcaaacac
tcagttgatcgtcctaatatttttttagcggctgaaaaaaccatcaacgagaatgacaaa
aatcagcacttgatcaaattagtccaaaaattacgtgcaccaggtctagtttatttttcc
agtaaaaaacaatgtgataaagtctgtgaattactaaaaaataagactggtttgagggtc
ggttcatatcatgctggactgtcttttagtgaacgctatgcagttcagcagcaattttta
agcggacgcttagacctgatctgtgcaacttcagcattcggaatgggaattaataaaagt
gatattcgcttcgtgattcattatcatatgccacaagatctcgaaagttatgtgcaagag
atcggcagagcggggcgtgacggcaaacaaagtattgcaattatcttatttagtgaaaat
gaccagtttttgcaaagaaggttagcattcagttctttgccaaatgccgatgaattagaa
acttatcagaaatttcccgaactgctagaaaaaatgagccgggaaaatgaaagtgctgag
ttagttttgcgctatcaacaaatggggatcgattttacgcaaatgagtcatattttcgcg
caacgccgtactgaaaaattacaggcgatccaacaaatgttaacatatgtaaatttggaa
aactgtaaacgcaattttattctaaattattttgatgaagatcaacatgtcaaacatgac
aataagtgttgccaattagcggagcagtcgcttgatctgcgactgctttttggttctcag
ccatcgcctattaaacatcagaaaaatgatagtccgaaaagttatcagactattttaaaa
aaattattcaataattattag
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