Ligilactobacillus acidipiscis: LAC1533_1334
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Entry
LAC1533_1334 CDS
T05349
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
laca
Ligilactobacillus acidipiscis
Pathway
laca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAC1533_1334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laca03019
]
LAC1533_1334
Messenger RNA biogenesis [BR:
laca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAC1533_1334
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
P8
Motif
Other DBs
NCBI-ProteinID:
SFV40754
UniProt:
A0A1K1KPF1
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All DBs
Position
I:complement(1458001..1459701)
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AA seq
566 aa
AA seq
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MSEIKISALGGVRENGKNMYIVEIKDEIFILDCGLKYPENELLGIDTVIPDFDYLRENSE
KIVGVFLSHGHADAIGALPYFLSEFNVPVFGSEFTIALAKIVCENEDSSKKFNDFHVTNA
DTEIDFENATVSFFSTTHSVPESLGIVIKTNKGNIVYTGDFKFDQTATDSYRTDFGRLAE
IGKEGVIALLSDSANAENPSEPVDEHVIADLISETFEYHKGRVVVACVASNLMRVQQVLD
AAAANERKVTLTGFDAEKVINTALKMKKLQLPKKDLLIKPADMSKYAPEQLVILEAGRAG
EPLKSLYRMATGKYKGINLSDGDLAFITTTPSHAMDTKVAKTRDMIYRSGAEVKAISDEY
NSSGHASKRDLQLLINLLKPKYVVPIQGEYRLLVAHAESAEQVGIKPQNIFLLKNGDLLE
YDKGKMIMASSIEAGNTMIDGSGVGDIGNIVLRDRKVLSDDGIFIAVVTIDRKKHRIIDT
PKITSRGFVFVKASKDLMTESGEIVKKVVQNNLDNKEFDWSHLKQDIRENLNHYLYEQTH
RHPVILPIIMEVNQHRHYKKKKQASK
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaataaagatctctgcactaggtggtgtcagagaaaacggaaagaatatgtat
atcgttgaaattaaagatgaaatctttattttggattgtggtttaaaatatcccgaaaat
gaattgcttgggatcgataccgtgatccccgatttcgattacttgcgcgagaattcagag
aaaatcgtgggtgtttttttgagccacggtcatgcagatgcaattggtgctttgccgtac
tttctgagtgaatttaatgttcctgtttttggctcagaatttacgatcgcattggctaag
atcgtatgtgaaaatgaggatagttcaaagaaatttaatgattttcacgtaacaaatgct
gatactgaaatcgattttgagaacgcaacggtttcattctttagtaccactcattcagtt
cccgagtctttgggaatagttattaaaacaaataaaggaaatatagtttatacaggtgat
tttaagttcgatcaaacagctactgacagttatcggactgattttggcaggttagctgaa
atcggtaaagaaggagtcattgctttattaagtgattcagccaatgcggaaaatccatct
gaacctgttgatgaacatgttattgctgatttgatcagtgaaacgttcgaatatcacaag
gggcgcgtagttgtggcttgtgtcgcatctaatttaatgcgtgtgcaacaggttttggat
gctgccgctgctaatgaacgtaaggtcacgctaacaggatttgatgccgagaaagtaatt
aatactgccttgaagatgaagaagctccaattacccaaaaaggatctattgatcaaacct
gctgatatgagtaagtatgctcctgagcaattagtcatattggaggctggtcgtgctgga
gaaccattgaaatccttgtatcggatggcaactggtaaatataagggcatcaatctgtct
gatggcgacttagcgtttatcacgacaacgccatcacatgcaatggatacaaaagtcgct
aaaactcgtgatatgatttatcgttctggcgcagaagtaaaggctatttcagatgaatat
aattcctctggccatgcaagtaagcgtgatctacagttgttgatcaacttactcaagcct
aaatatgttgtaccaattcaaggtgaatatcgcttgttggttgcacatgctgaatctgcc
gagcaagtcggtatcaagccacagaatatatttctgctaaaaaacggtgatcttttggag
tatgacaagggtaaaatgatcatggcatcgtctattgaagctggtaatacaatgatcgac
ggcagtggagttggcgatattggcaatattgtgctgcgtgatcgaaaggttctttctgac
gatgggatctttatagctgtggtcacgatcgaccgtaaaaagcatcggatcattgataca
cctaaaatcacttctcgcggctttgtctttgttaaagcaagtaaagacttaatgactgaa
agtggcgagattgttaaaaaggtagtccaaaataatttagataataaagaatttgattgg
agccacctgaaacaagatatcagggaaaacttaaaccactatctttatgaacaaacgcat
cgccatccagtgatattgccaatcatcatggaggttaatcaacaccgtcattataaaaag
aaaaagcaagcttccaagtaa
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