Lactobacillus sp. IBH004: LDX54_01340
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Entry
LDX54_01340 CDS
T10732
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
lach Lactobacillus sp. IBH004
Pathway
lach03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lach00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LDX54_01340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lach03400
]
LDX54_01340
Enzymes [BR:
lach01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
LDX54_01340
DNA repair and recombination proteins [BR:
lach03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
LDX54_01340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
UZN42214
LinkDB
All DBs
Position
108399..109226
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AA seq
275 aa
AA seq
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MILISWNIDSLNAALTGTSSRAVETRKVLEKIHDQNADIVAIQETKLRSTGPTKKHWEIL
TKEFPEYDIVWRSSEEPARKGYAGTMFLYKKELKPKVTYPIIGAPEPMDHEGRIITLEFP
EYFVTQVYTPNSGNGLKRLDDRQVWDEKYIAYLQQLDQEKPVLASGDYNCAHHEIDLKHP
DTNHHSAGFTDEERADFTKMLKAGFTDTFRKLHGNVEGVYSWWAQRVRTAKANNSGWRID
YWLTSNRVADKVKRSEMMDTGARADHCPILLEIDW
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgatcttaatttcgtggaatatcgactcactaaatgctgctttaaccggaacttcctcg
cgtgcagtggagacacgtaaggttttagaaaaaatacatgaccaaaatgcagatattgtt
gccattcaagaaacaaaattacgctccacgggtcctactaaaaagcattgggaaatatta
actaaggaattccctgaatatgatatagtctggcgttcctcagaagaaccagctcgtaaa
ggttatgccggaactatgtttttatataaaaaagaacttaagcctaaagtaacttatcct
attattggagcgccggagccaatggatcacgaaggcagaattattactttagagtttcct
gagtattttgtcacgcaagtatatacccccaattctggcaatggccttaagcgcctagat
gaccggcaagtgtgggatgaaaaatacatcgcatatttgcagcaattagatcaggaaaag
ccggtcttggctagtggtgattataattgtgcgcaccatgaaatcgacctgaagcatcct
gatactaatcatcattctgctggctttactgatgaagaacgggcagattttaccaaaatg
cttaaagccggttttacagatacttttagaaaacttcacggcaacgttgaaggggtctat
tcttggtgggctcaaagggtaagaactgctaaagccaacaattcaggctggagaattgat
tactggctgacaagcaatagagttgctgataaggtaaagcgctctgaaatgatggataca
ggagcgcgcgccgatcattgcccaattttactggaaatagactggtag
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