Lactobacillus sp. IBH004: LDX54_04000
Help
Entry
LDX54_04000 CDS
T10732
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lach Lactobacillus sp. IBH004
Pathway
lach03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lach00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDX54_04000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lach03019
]
LDX54_04000
03009 Ribosome biogenesis [BR:
lach03009
]
LDX54_04000
Enzymes [BR:
lach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDX54_04000
Messenger RNA biogenesis [BR:
lach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDX54_04000
Ribosome biogenesis [BR:
lach03009
]
Prokaryotic type
rRNA helicases
LDX54_04000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UZN42728
UniProt:
A0A9Y1GP23
LinkDB
All DBs
Position
complement(1464577..1466058)
Genome browser
AA seq
493 aa
AA seq
DB search
MKFSELGLKDELLKAIKRSGFEEATPIQEQTIPLALAGRDVIGQAQTGTGKTAAFALPIL
QNLDKHNKVIQALIIEPTRELAIQTQEELFRLGRDENARVQVVYGGADIGRQIRSLKNHV
PAILVGTPGRLLDHLKRKTIDLENVNTIVLDEADEMLDMGFIQDIESILGYVKNRKQTLL
FSATMPKPILNISEKFMHNPEIVRIKTKELTADLIDQYFVRAKDSEKFDIMCRLIDVESP
DLAVVFVRTKRRVDEVTRGLQARGYNAAGIHGDLTQARRLTVLKRFRAGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGSSITFVTPNEIGYMRTIEQLTK
KKMTPLRPPSDDQALRGQLKVAKSKIEDIMKDDLSKYTDDANELLENYSAVDLVSAFLKN
LSKDSSNVEVKISSEKPLPYKGNGRGGRGRYSHGRNSRGGYRGDRNRSRGNYRGGHSRRS
GNGRNFIIKNKKG
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
gtgaaattttcagaattaggattaaaagatgagcttttaaaagcaattaagcgctcaggc
tttgaagaggcaacaccaatacaggaacaaacaattcctctggctttagcaggcagggat
gtaattggtcaagctcagacgggtactggtaagactgcggcctttgcgctacctatcttg
cagaatttagataagcataataaggtaattcaagctttaattatagaaccgactcgtgaa
ttggccattcaaactcaagaagaacttttccgactgggtcgtgatgaaaatgctcgcgtg
caggttgtttacggtggtgctgatattggacggcaaattcgttctcttaaaaatcatgtg
cctgcgattttagtagggacaccgggacgattacttgaccatttaaagcgcaagacgatt
gatttagaaaatgttaataccattgttttagatgaagctgatgaaatgctggacatgggt
tttatccaagacattgaaagtattttaggctatgttaaaaaccggaaacagactctactg
tttagtgctactatgcctaaaccaattttgaacattagtgaaaagttcatgcataatccg
gaaattgtacggattaaaactaaagagctaactgccgatttaattgatcagtactttgtt
cgggcaaaagattcagaaaaatttgacatcatgtgccgtttgattgatgttgaaagccca
gatctggcagtagtatttgttagaactaaacgccgagttgacgaagttactaggggactt
caggcccgtggctacaatgcagcgggaattcacggtgacttgacccaagctcgcagactt
actgttttaaaaaggttccgtgctggtaaactagatattttagttgctacagacgtggct
gcacgtggattggatatttcaggcgtaacacacgtctataactacgatatccctcaagat
cctgactcctatgttcaccgcatcggtcgtaccggccgtgccggacaaaatggtagttca
atcacttttgttacgccaaatgaaattggttatatgcgtacaatagagcaattaactaag
aaaaagatgacccctttgcgtccgccatctgatgatcaggctttaaggggccaacttaaa
gtggctaaatctaagatagaagacataatgaaagatgatctatctaaatatactgatgat
gccaacgaattattagaaaattattcagcagttgatttggtatcagcttttctgaagaat
ttgtcaaaagattcttcaaatgttgaggtcaaaattagttctgaaaaaccattgccgtat
aagggtaatggtcgtggtggccgcggtcgctatagtcatggcagaaatagtcgtggaggc
tatcgcggtgatcgtaaccgcagccgtggcaattatcgtggaggccattctcgccgctcc
ggtaatggcagaaattttattattaaaaataaaaaaggttaa
DBGET
integrated database retrieval system
