Lactobacillus sp. IBH004: LDX54_04025
Help
Entry
LDX54_04025 CDS
T10732
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lach Lactobacillus sp. IBH004
Pathway
lach03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lach00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LDX54_04025 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lach03400
]
LDX54_04025 (mfd)
Enzymes [BR:
lach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LDX54_04025 (mfd)
DNA repair and recombination proteins [BR:
lach03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LDX54_04025 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
DUF924
MFD_D3
AAA_22
Y_Y_Y
BBMV_Gp1_N
RecG_dom3_C
IstB_IS21
BRCC36_C
Motif
Other DBs
NCBI-ProteinID:
UZN42733
UniProt:
A0ABF7RRF3
LinkDB
All DBs
Position
complement(1457965..1461459)
Genome browser
AA seq
1164 aa
AA seq
DB search
MRLTNIIEKDHDLINFIANTSNTKNSLITGANAGAFDLLLCQIVETLQKPLVVLEENENK
AQKLYSELNAIMPEDSVQIFPVDASIATQTAVTSPDELSSRIQALNFLLSQNKGIVITTP
QGLQYKLSKPQEYQAARREFEPEKEFDLAELTNWFVQVGFRRENLVAKPGEFALRGDILD
VYPLDRENPVRIEFFGDEIDTIKEFDLASQRSQKQIDKIVVTAAQDRVFAANNFKRAAQK
IAKAMADSPAGEKEVKEHFAESLDELNNGSLPQNYAFLTDFLIDNPDNLLDYLANSGLVL
LDDWPLIEQAVKTVDEQNAGFIADELKTGAMIPGQELHSDFHKNWSQDKHSHLYFSLFQR
SIGRVKLGQLFDWQTREPEQFFSQMPLIKSEIESYQKKQQTVILQADNNKRAKQISQTMA
EFGMDVAIVKPDDLVERQTQITVGGFASGFTLPNNNLVYLTERELFNKVTHHSRRIKTME
NAQRLRSYTELKPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGDQLFVPADQL
KLVQKYVASEGKRPHVNKLGGSEWAKTKSRVQSKVEDIADELIALYAKRESEKGFAFSKD
DDLQRQFEDAFPYVETPDQLRSIKEIKHDMEQEKPMDRLLVGDVGFGKTEVALRAAFKAI
EDNKQVAFLVPTTILAQQHYETIQDRFKNFPVNYAVLSRFQTPAEAKKITEGLRNGKIDL
VVGTHRLLSKDVKFKDLGLLIVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMS
MIGVRDLSVMETPPSNRYPIQTYVMEQIPSVVKEACLREIQRGGQVFYLHNRIGDIDDVV
LELEALMPTARIVSVHGRMSKNQMEDILYRFLNREFDILVTTTIIETGIDMPNVNTMLIE
NADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLDAIRDFTELGSGFKIA
MRDLSIRGAGNMLGAEQHGFIDSVGYDLYSQMLSDAIKNRKNKKKVRKSNAEIDMGLEAY
IPEKYISDQEEKIEFYKKIKSASPADIEQIKDELIDRFGNYPEPVENLLAISQLKAEADL
AQVRNITKINNQQVKVEFELEASKELQGPNIFKALEHVSFKAKINLSPANRLVVLLELPD
NLHQRQLFTNLITFMTAASDIIQR
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttaactaacattatagaaaaagatcatgatctgataaattttattgctaatact
agcaacaccaaaaattctttgatcaccggagctaatgccggtgcttttgatttgcttttg
tgccaaatagttgaaactttgcaaaagccgttggtggtattggaagaaaatgaaaataag
gctcaaaaactttatagtgaactcaatgcaattatgcctgaagacagtgtgcaaattttt
ccagtagatgcatcgatagcgactcaaacggcagttacttcacctgatgaattaagtagt
cgtattcaggcgcttaactttttgctgagtcagaacaagggcatcgtgattactactccg
cagggcttacaatataaattgtctaaaccacaagaataccaagcagcaagacgggagttt
gagcctgaaaaagaatttgatttagctgaactgactaattggtttgtgcaggtaggcttt
cgccgcgaaaatctggtagctaaacctggcgaatttgcattacggggagatattctagac
gtttacccacttgaccgcgaaaatcctgtcagaattgaattttttggtgacgaaattgat
actataaaagaatttgatttagccagtcaacgcagtcaaaagcagattgataaaatagtc
gttactgcagctcaagatcgcgtttttgccgctaataattttaaacgtgcggcacagaag
atagcaaaagctatggcagattctcctgctggtgaaaaggaagttaaggaacattttgcg
gagtcattggatgaactaaataatggttctttacctcaaaactacgcttttttaacagac
tttctaattgataatcccgataatttacttgattatttagcaaactctggtttggttttg
cttgatgactggccgttaattgagcaggctgttaaaacagtagatgaacagaatgccggt
tttattgctgatgaactaaaaactggtgctatgataccaggacaagagctgcacagtgat
tttcataaaaattggtcacaagataaacatagtcatctttatttttcattatttcaacgc
agtattggtcgcgttaagctaggtcaattatttgactggcagacaagagaacctgaacag
tttttcagtcagatgcctcttatcaagtctgaaatagaatcatatcagaaaaaacagcaa
acggtaattctgcaggcagataataataagagggcaaaacaaattagtcagacgatggct
gaatttggcatggatgtggcaattgttaagccagatgacttagtcgagcgtcaaacgcaa
attacggttggtggttttgccagcggctttactttacccaataataatctagtttattta
actgaacgagaactttttaataaagtaacgcaccacagtcgccgtattaaaaccatggag
aatgcccaaagactgcgtagttatactgaactgaagccaggagactatgttgttcacgtt
aatcacggaatcggccgctttgaaggaataaaaaccttagaaaataacggtgtcaaaaga
gactatattactattacctatcaacatggtgaccaattatttgttcccgctgatcagctg
aaattagtgcaaaaatatgttgcttctgaagggaaaagaccacatgttaacaagctgggt
ggtagtgaatgggcaaagaccaagagtagagttcaatctaaggtcgaagatatcgccgat
gaattaattgctttgtatgccaaaagagaatcggaaaaaggctttgctttttcaaaagac
gatgatttgcagcggcagtttgaagatgctttcccttatgtcgaaactccggatcagctg
cgctcaattaaggaaattaaacatgacatggaacaagaaaagccgatggacaggctactt
gtgggtgatgttggctttggtaaaactgaagtagctttaagagcagcatttaaagcgatt
gaagataacaagcaagttgcctttttggtacctacgactatcttggcacagcaacattat
gaaactatccaagatcggtttaaaaattttcctgttaattatgctgttttatcccgtttt
caaactccagctgaagccaaaaaaattactgaaggtttaagaaatggcaagattgatctt
gtagtcgggacacacagattattatcaaaagatgttaagttcaaagacttaggcttactc
attgttgatgaagagcaaagatttggcgtaaagcacaaagagaggcttaaagaactgaag
gccaacattgatgttttaacgctaactgcaacaccgatccctcgtacgttgcacatgtca
atgattggtgtgagggatttatcagttatggaaaccccgccatccaatcgttatccgatt
caaacctatgtaatggaacaaataccaagcgttgttaaggaagcctgtctgcgggaaatt
cagcgtggaggacaagtcttctatttgcacaatcgtattggtgatattgatgatgttgtg
ctggaactcgaagctctcatgcctacagctaggattgtcagtgttcatggccgtatgagt
aaaaaccaaatggaagatattctgtatcggtttttaaatagagaatttgatattttagtt
acaactaccataattgaaaccggaatagacatgccgaatgtcaataccatgttaattgaa
aatgcagatcattatggcttaagtcagctttaccagttgcgtggcagaattggtcgtagc
gcccgcttggcatacgcttattttttatatcagcccaataaggttctgacagaaattgga
gaaaaaaggttggatgccatacgtgattttaccgaacttggatcaggattcaaaattgct
atgcgtgatttgtcaattcgtggagccggcaatatgcttggagcagagcagcatggcttt
attgacagtgtcgggtatgatctgtattcacaaatgctttctgatgccattaaaaatcgc
aaaaacaaaaagaaagtcagaaagagtaacgctgaaattgatatgggacttgaagcatat
attccagaaaaatatattagtgatcaagaagaaaaaattgaattttataagaaaattaaa
tctgccagtcctgctgatatcgagcaaattaaagatgagttgattgaccgctttggtaat
tatcctgaaccggtcgaaaatttactggcaatttcacagttaaaggctgaggcagattta
gctcaggtcagaaatattaccaaaattaataaccagcaggtaaaagttgaatttgaatta
gaggcttcaaaagaattacagggacctaatatttttaaggctcttgaacatgtttcattt
aaagcaaaaatcaatctttccccggctaacaggctggttgtgctgttggaacttcctgat
aatctgcatcagagacaattatttactaatttaattacttttatgacggctgccagtgat
attattcaaagatag
DBGET
integrated database retrieval system
