Lactobacillus sp. IBH004: LDX54_04125
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Entry
LDX54_04125 CDS
T10732
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lach Lactobacillus sp. IBH004
Pathway
lach03020
RNA polymerase
Brite
Enzymes [BR:
lach01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LDX54_04125 (rpoC)
Transcription machinery [BR:
lach03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LDX54_04125 (rpoC)
DNA repair and recombination proteins [BR:
lach03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LDX54_04125 (rpoC)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UZN42750
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Position
complement(1431404..1435063)
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AA seq
1219 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDI
SPRLLEEVIYFAAYIVIDPGDTDLEFKQLLTEAEYREQKEKYGNRFTAKMGAEAIRDLLR
KVDLNKEVTDLKKELETATGQKRTRAIRRLDILDAFKDSGNKPEWMVIDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRSVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRKIATNIKSAKRKIDREDDDVWDVLEDVIKERTVLLNRAPTLHR
LSIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRMLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAEKGREGEGMIFNSPDEATVAYTNGDIHYHTIIGMS
ADSMPKKAWPKGYEHGIFVTTYGRIIFNQIFPEDYFYVNEPTEENLNNPLAAKYFLEPGE
DIHEKIDSVANDLISTPFKKSFLSDSIATIYKYYKVQRTSEYLDDLKTLGYTSSTTSGIT
IGMTDVPEIQDKDEKVAKAHKQVDVVSKQFRRGLITEQERHDRVISIWNDCKDQVQDEIA
QIYDPRNPITIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIREDDCGTDRGIDVHAIMEGDELIE
PLYDRLLGRFTAETVKDPRTGATIIGRNVMMDENLAHQICDAGVTNVKIRSILTCDTPHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRAIISEVDGVVDSIQENPAEHTREITVKGKIDTRSYSVPYTASVAVAEG
DEVQRGDKLTLGSIDPKELIQVTDTLTTEEYILVEVQKAYRMQGVDISDKHVEVLTRQML
QKVRVLDPGETDLLPGEIMDIGQFKDRNTSVIISGGIPATAQSVILGITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGLPIYRDMEPESDVKKPKSV
YSIADIEKKMKEADQARES
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataaatttgaaagcatgcaaattggccttgcatctccgaataaaatt
cgcagctggtcatacggtgaagttaaaaaaccagaaactattaattaccgtactttaaag
ccggaaaaagatggtttgtttgatgaacgaattttcggaccgactaaggattggtcatgt
gcatgtggtaaatataaaggtgtgagataccgcgggatcgtctgtgatcgttgtggtgtt
gaagttacctcctctaaagttagaagagaacgaatgggtcatattgaattggccgcacca
gttactcatatttggtattttaaagggattccatcaagaatgggactcattttggatatt
tctccgagactccttgaagaagttatctattttgcggcttatattgtaattgatcctggt
gataccgatctagaatttaaacaacttttaacagaggcagaataccgggaacagaaagaa
aaatacggtaatcgctttacggccaaaatgggtgctgaagcaattcgtgatttgttacgt
aaagttgatttaaataaggaagttaccgatttaaagaaagaactggaaactgctactggt
caaaaacgtacccgtgctatcagaagacttgatattctggacgcgtttaaagattctggt
aataaaccagaatggatggttatagatgctgtcccagttataccacccgacttgcgcccg
atggttcaacttgaaggtggacgttttgcgacttctgacctaaatgatttatacagaaga
gtaattaaccgtaacaatcggttaaagagactgttagatctaaatgcacctaatattatt
gtgcaaaacgaaaaacggatgctgcaagaagcagtagatgcgttaattgataatggccgc
cgtggacgttctgtagtaggaccaggtaaccgcccgctgaaatctttatcgcatatgctt
aaaggtaagcagggacgtttccgtcagaacctgcttggtaaacgtgttgactattccggt
cgttccgttattgatgtttctccaaaattgaaattctatcaatgtggtgttccgcgtccg
atggccttggaattgtttaaaccatttgtcatgcatgagcttgttaagcgtaagattgct
acaaatatcaagagtgctaaacggaaaattgaccgcgaagacgatgatgtctgggatgta
cttgaggatgttattaaggaaagaacggtattgttaaaccgtgcccctactttgcaccgt
ttgagtattcaggccttcgaaccagttttggtacctggaaagtccattcgtctgcaccca
cttgcttgtgaggcttacaacgctgactttgatggtgaccagatggcgattcacgtgcct
ctgtcagatgaggctgttgctgaatcaagaatgttaatgctggctgctcaccatattctt
gctcctaaggatggtaaaccaattgttactccatcacaggatatcgttttgggtaactac
tggttgactcaggctgaaaagggtcgcgaaggtgaaggaatgattttcaattcacctgat
gaagcgacagttgcttacactaacggtgacattcattaccacactattatcggaatgtct
gctgactcaatgccgaagaaagcatggcctaaaggttatgaacatggtatttttgttact
acatacggcagaatcattttcaatcaaattttcccagaagattatttctacgttaatgaa
ccaactgaagaaaacttgaataatcctcttgctgccaagtacttcttggagcctggcgaa
gatattcatgagaaaattgacagcgtggcaaatgatttgatttctacaccatttaagaag
tccttcttgtctgattctatcgctacaatttacaagtattacaaggttcaaagaacttca
gaatatcttgatgatttgaagactttaggttataccagttcaactacttctggtattacg
attggtatgaccgatgttcccgaaattcaggataaagatgaaaaagttgcaaaagcccac
aaacaagttgatgtggtgtctaagcagtttagacgcggtttaatcaccgagcaggaacgt
catgatcgtgtaattagcatctggaatgattgtaaggatcaagtccaagatgaaattgct
cagatttatgatccacgtaatcctattaccatcatggccgactctggtgcccgtggtaat
atttcaaactttactcaacttgctggtatgcgtggcttaatggctactccaaacggtggt
ttgttcgaaattccagttacttccaactttaaggaaggtttgtcagttctagaactgttc
atgtcaactcacggtgcacgtaaaggtatgacggatactgctttaaagactgcacaatct
ggttacttaactcggcggttagtcgatgttgcgcaagacgttattatccgtgaagatgat
tgtggtaccgatcgcggtattgatgttcacgcaatcatggaaggtgacgaattaattgag
ccactctacgatcgattattgggacgctttactgccgaaacggttaaagatcctagaacc
ggtgccacaattatcggtcgtaacgttatgatggatgaaaacttggctcaccaaatttgc
gatgcaggtgtgactaacgtaaagattagatcaatcttaacttgtgacacgccacacggt
gtttgccgcaagtgttatggtatgaacttagctacaggtgaagaagttgaagttggtgaa
gcagttggtactgttgccgctcaatcaattggtgaacctggtacgcagctgactttacgt
acatttcacaacggtggtgttgccggcgctgaagatattactcaaggtcttcctcgtgtg
caggaattgtttgaagctcgtaatcctaaaggacgtgcgataatttctgaagttgatggt
gtagttgattcaattcaggaaaatcctgctgaacatactcgtgaaatcactgttaaaggt
aagattgataccagaagttacagtgttccttatactgcatcagtagcagttgccgagggc
gatgaagttcaacgtggcgataagttaactcttggttcaattgatccgaaagagttgatt
caagttaccgatactttaactactgaagagtacattctggttgaagtccaaaaagcatat
agaatgcagggtgttgatatttctgacaagcacgtcgaagtattaaccagacagatgtta
caaaaagttcgtgtgcttgatcctggtgagaccgacttgttgccgggcgagattatggat
attggtcaatttaaagatcgcaacacatctgtaattatttctggtggtatacctgcaact
gcccaaagtgtaattctgggtattaccaaagctgcccttgaaactaacagtttcttatca
gctgcttcattccaggaaacaactcgtgtcctaacagatgcttctattcgtggcaagaat
gatccattacttggattaaaggaaaatgttattatcggtaagatcattccagctggtact
ggtcttccaatttatcgtgatatggaacccgagtcagatgtaaagaaacctaaatctgtt
tactcaatcgcagacattgagaagaagatgaaggaagccgatcaggctagggaatcataa
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