Lactobacillus sp. IBH004: LDX54_04805
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Entry
LDX54_04805 CDS
T10732
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lach Lactobacillus sp. IBH004
Brite
KEGG Orthology (KO) [BR:
lach00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lach03019
]
LDX54_04805
03009 Ribosome biogenesis [BR:
lach03009
]
LDX54_04805
Enzymes [BR:
lach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDX54_04805
Messenger RNA biogenesis [BR:
lach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDX54_04805
Ribosome biogenesis [BR:
lach03009
]
Prokaryotic type
rRNA helicases
LDX54_04805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF2201
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UZN41103
LinkDB
All DBs
Position
complement(1326138..1327493)
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AA seq
451 aa
AA seq
DB search
MNNIFENDKLSPALRQGLKKINFVKPTEVQEKVIPVLLAHKNAVVQAVTGSGKTHAFLIP
VMNEINEKLPYPQAILTTPSRELAQQLYQVTRQLRDAAGLNISVAQLAGGTDRERQLEKI
GRHKPQIIIATPGRLHDFVAKKILPLDYVTNFVIDEADMTLDMGFLGEIDFIAQRLPQNC
VLTAFSATIPVKLANFLRKYMAKPETIIVDNPTVISPTVKNDLLDVGSKNRKKILYQLLT
IGQPYLALIFANTKQTVDELTEFLIKQGLRVAKIHGGITERERKRTMREVEAGQFQYVVA
TDLAARGIDIAGVSLVINYEIPRELEFVIHRIGRTGRNGMSGHAITLIREEEMDQIFKLE
NMGVHFDFVELKNGALVPRKHYHSRKTRQSSSQSLDNKMRGLVKKAQKKRKPGYKKKIKR
AIQLDKAQKNKIEQRSKIRKAKRQRKMKRNN
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaataacatttttgaaaacgataagttaagtccagcactaagacaaggtctgaaaaaa
ataaactttgttaaaccgactgaggtgcaggaaaaagtaatacctgttttactggcacac
aaaaatgctgtagtacaggcagttacgggatcgggtaaaactcatgctttcttaatccct
gtaatgaatgaaatcaatgaaaaactgccgtatccacaagcaattttgactactcctagc
agagaacttgctcagcaattatatcaagtgactcgtcaattaagggatgctgccggatta
aatatttcggttgcccaattggcaggaggcactgatcgggaacgccaacttgaaaaaata
ggtaggcacaaaccacaaattatcatagctactcctggtaggcttcatgattttgttgcc
aaaaagattttaccattagactatgtcacaaattttgtcattgatgaagctgacatgact
ttagatatgggtttcttgggtgaaattgactttattgcgcagagattgcctcaaaattgt
gttttaacagctttttctgccacaattcctgttaaattagctaactttttacgcaagtat
atggctaaaccagaaaccattattgtagataatcctacagttatttcgccaacagtaaaa
aatgatttacttgatgtcggatctaaaaatcgaaagaaaatactatatcagttactaaca
attggtcagccttatttagcacttatttttgctaataccaagcaaacggtagatgaatta
actgagtttcttattaaacaagggttaagagttgctaaaattcatggcggcattactgaa
cgtgaacgaaaaagaaccatgagagaagtagaagctggacaatttcaatatgtcgtagcc
actgacttggccgcgcgggggattgatattgcaggtgttagtctagtcattaactatgaa
attccgcgtgaattagaattcgtaattcatcgtattggtcgaaccggtcgcaacggtatg
agtggtcacgccattactctaattcgtgaagaagaaatggatcagatttttaaattagaa
aatatgggagtccatttcgattttgtggaattaaaaaatggggctctagtaccacgtaaa
cattatcatagccgtaaaacaaggcagtcgtcttctcaaagtcttgataataagatgcgt
ggcttggtgaagaaagcccaaaagaaacgtaagcctggctataagaaaaagattaagcgt
gctatccaactagataaagcgcaaaagaataaaattgagcaacgtagtaaaattcgtaag
gcaaagcgccaaagaaaaatgaagcgtaacaattaa
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