Lactobacillus sp. IBH004: LDX54_05065
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Entry
LDX54_05065 CDS
T10732
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
lach Lactobacillus sp. IBH004
Brite
KEGG Orthology (KO) [BR:
lach00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lach03019
]
LDX54_05065
Messenger RNA biogenesis [BR:
lach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDX54_05065
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
MIB_HERC2
Motif
Other DBs
NCBI-ProteinID:
UZN41143
LinkDB
All DBs
Position
complement(1270765..1271742)
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AA seq
325 aa
AA seq
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MYKRLLDYNDGEELELVVLIKNSQLRHTKKGKLYLAMSFGDSSGEIRGNFWDANDQDAST
FNSGTIVELNGKREEYQGQPQIKIYSLRVVGPEEGYDLRQFIKSAPEKVADMKEEINQYV
FEILNPTWNRIVRFLLKKWDKRFFEFPAGKSNHHAVRGGLAYHTLSMLRDAKGLANNYAQ
INRSLLYAGCILHDMGKVLELTGPAATQYTNEGNLIGHLVLIDEQIMLAAQQLNIDLESE
DLLLLRHMVLSHHGKFEYGSPKLPALLEAELLHRIDDLDASIYAITNALQHTRPGNFTEN
IMSQGGRKFYRPKDDESLAKSHKLE
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgtataaacgtttgctggattataatgatggcgaagagttagaactggtcgtgttaatt
aagaactcgcaactaagacataccaaaaagggtaagctctatttggcaatgtcatttggt
gattcatctggtgaaattcgcggtaatttttgggatgccaatgaccaagatgcctctaca
tttaattcaggaacaattgttgaacttaacggcaaacgggaagaatatcaggggcagcca
caaataaaaatttatagtctacgggttgttggccctgaagaaggttatgatctcaggcag
tttattaaatcagccccagaaaaagttgctgatatgaaagaagaaatcaatcagtacgtt
tttgaaattttgaatccaacctggaaccggatagtacggtttttattaaaaaaatgggac
aagcggttctttgagtttccagctggaaaaagtaaccaccatgccgtgcgaggaggtctg
gcataccatacattatcaatgttgcgggatgctaaaggcctggcaaataattatgcgcaa
attaatcgttcattattatatgctggctgtattttacatgatatgggtaaagtattggaa
ttaactggtccggctgccactcaatatactaatgaaggtaacttgattggccacttggtt
ttaattgacgagcaaataatgttagcggcgcaacaactaaatattgaccttgaatctgaa
gacttgctcttattgcgtcatatggttttgtctcatcatggtaaatttgagtatggctca
cctaaattgccggcactccttgaagcagaattgttacatcgcattgatgatttagatgcg
tcaatttacgctattactaatgctttacaacatacacgaccgggcaattttaccgaaaat
attatgagtcagggtggccggaaattttatagacctaaagatgatgaatctttagctaaa
tcacataaattagaataa
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