Lactobacillus sp. IBH004: LDX54_05610
Help
Entry
LDX54_05610 CDS
T10732
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
lach Lactobacillus sp. IBH004
Brite
KEGG Orthology (KO) [BR:
lach00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LDX54_05610 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lach03019
]
LDX54_05610 (rnc)
03009 Ribosome biogenesis [BR:
lach03009
]
LDX54_05610 (rnc)
03036 Chromosome and associated proteins [BR:
lach03036
]
LDX54_05610 (rnc)
Enzymes [BR:
lach01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
LDX54_05610 (rnc)
Messenger RNA biogenesis [BR:
lach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDX54_05610 (rnc)
Ribosome biogenesis [BR:
lach03009
]
Eukaryotic type
90S particles
RNase
LDX54_05610 (rnc)
Prokaryotic type
rRNA processing factors
LDX54_05610 (rnc)
Chromosome and associated proteins [BR:
lach03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
LDX54_05610 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DSRM_2
RM44_endonuclase
Monellin
Dicer_dsRBD
Motif
Other DBs
NCBI-ProteinID:
UZN41246
LinkDB
All DBs
Position
complement(1162878..1163564)
Genome browser
AA seq
228 aa
AA seq
DB search
MVSTKFINRLDKKYKIKFNDQKLLEEAFTHSSYANEHPGDGIRDYEKLEFLGDAVLELAI
SDYLYRNFSSLNEGELTRMRSNIVDTEGFAEFAQKFGFPAEINLGHGEEKAGARSRKTLL
EDVFEAFNGALFLDQGMEAVEHFLSLTVYPLIDAGKFDASRDYKTDLQELLQQNGPVKIE
YEVLKEEQLPSSFTVQLVVNGKVLSQGQGHNKKAAEQEAAKTALNKLN
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atggttagtaccaagtttattaatcgattagataagaaatataaaattaaatttaacgat
cagaagttattagaagaagcctttacccactcttcatatgccaacgagcatcctggagac
ggcattcgtgattatgaaaagttggaatttttgggggatgcagttttagaattagcaata
tctgattacctttatcgtaatttttcgagtcttaatgagggtgaattaaccaggatgcgt
tctaatattgttgatactgaaggctttgcggaatttgcccaaaaatttggctttccggct
gaaattaatctaggtcatggtgaggaaaaagctggtgcgcgttctcgtaagacactgcta
gaggatgtttttgaagcatttaatggagcgctttttcttgatcagggcatggaagcagtc
gaacattttttgagtttaacagtgtatccgttaattgatgccgggaaatttgatgcttca
cgtgattataagacagatttacaagaattgctgcagcaaaacggaccagtaaagattgaa
tacgaagtcttaaaagaagaacagctgccgtctagttttactgtacagttagttgtcaat
ggcaaagtattgtctcaagggcaaggccataataaaaaagctgcagagcaagaggctgca
aaaaccgctttaaataagcttaattag
DBGET
integrated database retrieval system
