Lactobacillus sp. IBH004: LDX54_06850
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Entry
LDX54_06850 CDS
T10732
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lach Lactobacillus sp. IBH004
Pathway
lach03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lach00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDX54_06850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lach03019
]
LDX54_06850
Messenger RNA biogenesis [BR:
lach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDX54_06850
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4755
Motif
Other DBs
NCBI-ProteinID:
UZN41481
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Position
899332..901116
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AA seq
594 aa
AA seq
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MTDQVKIMILSGVREQGKDMFAVQVNDEIFVLDAGLKYPDSTLFGIDLVIPDMDFFEQYG
DQVVGIFLTHGHADSIGALPYILRKYDIPVFGSQLTIELAKITVRRENKRCKNSLFHVID
AETEIEFKNANISFFPTTHSIPDSLGIDVHTPAGEVVYTGDFKFDPSAAPKYRTDLDRLA
EIGQKKVLALLSDSSNAEASLPNVAEQDIGDYVTNVFRNANGRVIVAAKASNLIRIQEVL
NAAYQTGRHVLLTGRDLAKIVRTAMNLGYLNVPKGLLMRVKNLKETPDEKTVILETGQMG
EPLNSLQKMAKNRHSMITIHKGDLVFIATTPSHSVETVVAQTSDLVYRAGGTVIQLGKAK
HTSGHATGRDLQLLIDILKPQFLIPVIGEYRLLEVHKDLAIRAGMDKDNIFITKNGDCLN
YDFNQKRLYLTDPVPGEDTMIDGSGIGDVGNIVLRDREVLSDDGIFIAVVTIDRRKKKII
AQPQVTSRGFVYIKANQQLMRDSIELIKKTINNNFEHKKFDWTEIKQDVRNDLEKFLYRK
TNRRPVVLPVVMEVNQNRHRAMQKRNSKSELPKKETHHPVDVNKTGQRIIKKDK
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcaagttaaaattatgattttgagcggtgttcgtgagcaaggaaaagacatg
ttcgctgttcaagttaatgatgaaatttttgttcttgatgccggccttaaatatcccgac
agtacattgtttggaatagatctggttattccagatatggattttttcgagcaatatggt
gatcaggtagtcggcatctttttgacacatggacatgcagattcaattggggcactacct
tatattctacgaaaatatgacattccagtttttggctcccaattaacaattgaattggct
aagataacagtaagacgtgagaataaacggtgtaaaaacagtctctttcacgtgattgat
gcggaaacagagattgaatttaaaaacgccaatatttcttttttcccaactacgcattcc
atccctgattctcttggcattgacgtgcatactccagccggagaggtggtttacacaggc
gattttaaatttgacccttccgctgctcctaaataccggactgatctagatcgattagct
gaaattggtcaaaaaaaggtattggctttattaagtgattcttcaaatgcagaggcatct
ttaccaaatgttgctgaacaggacattggagattatgttacaaatgtttttcgtaatgca
aatggtcgggtaattgttgctgcaaaagcctcgaatttgattagaattcaagaagtttta
aacgcggcctatcaaacgggtagacatgttttactgactggaagagatttagccaaaatc
gttcgtactgcaatgaatctgggttatttgaatgtccctaaaggtttattaatgagggtt
aaaaatttaaaagaaactccagatgaaaagacggttattttggaaaccggtcaaatgggt
gagcccttaaattcattgcaaaagatggctaagaaccgtcacagcatgatcacaattcat
aagggagacctagtctttattgcgacgacaccttctcattctgtggaaacggttgtggca
caaaccagtgatctggtttatcgtgctggtgggaccgttattcaattaggtaaggcaaag
cataccagtggacacgcgacaggccgtgatttgcaactacttattgatattttgaaaccg
caatttttaattcccgttattggtgaatatcgactgcttgaagtacacaaggacttagct
attagggcaggaatggataaagataatatttttattaccaagaatggagattgcttaaac
tacgatttcaatcaaaagcgcctttatttaacagatccggtcccaggtgaggatacgatg
attgacggctctggtatcggggatgttggtaatattgttttacgagacagagaagtatta
tcagatgacggtattttcattgctgtagtcacaattgatcgccgtaagaaaaagattatt
gctcaaccacaagttaccagcagaggctttgtttacattaaggccaatcagcaactgatg
cgtgacagcattgaattgattaaaaaaactatcaataataattttgaacataaaaaattt
gattggactgaaattaaacaagatgttcgaaatgatttggaaaagtttctctaccgcaaa
acgaatagacgcccagtagttttaccagtagtaatggaggttaaccaaaaccgccatcgt
gctatgcaaaaaagaaatagtaaaagcgagttgcccaagaaagaaactcatcatcctgtt
gatgtcaataaaaccggtcaaagaattatcaagaaagataaataa
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