Lacinutrix sp. Bg11-31: CW733_01260
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Entry
CW733_01260 CDS
T05225
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
laci
Lacinutrix sp. Bg11-31
Pathway
laci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
laci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CW733_01260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
laci03021
]
CW733_01260 (rpoC)
03400 DNA repair and recombination proteins [BR:
laci03400
]
CW733_01260 (rpoC)
Enzymes [BR:
laci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CW733_01260 (rpoC)
Transcription machinery [BR:
laci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CW733_01260 (rpoC)
DNA repair and recombination proteins [BR:
laci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CW733_01260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
AUC80832
LinkDB
All DBs
Position
268246..272547
Genome browser
AA seq
1433 aa
AA seq
DB search
MARKQDKNTVQRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQAGNAKNAEGEPIQKMDFLTEEEYLNILEELPQDNNY
LEDSDPNKFIAKMGAECLIDLLARIDLDSLSFELRHKANTETSKQRKTEALKRLQVVEAL
RESNLNRENRPEWMILKVVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLLDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELRLFECGLPKNMAAELYKPFIIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILESVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACAAFNADFDG
DQMAVHLPLGPEAILECQMLMLASHNILNPANGAPVTVPSQDMVLGLYYMTKLRTSTPEV
KVKGEGLTFYSAEEVNIAYNEKRVDLNAQIKVRTIDFNAEGELVPQIIETTTGRVLFNEK
VPAAAGYVNQVLTKKSLRDIIGDILKLTSVPETADFLDEIKTLGYLFAFRGGLSFSLGDI
IIPPEKQSMIDAANTKVDGIKANYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGSIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNSVDCGTLRGVEVSALKKND
EVVEKLGARVLGRIALNDVYNPLTEELIVEAGELIEDDIAAAIEASPIDAVEVRSPLSCE
AKKGICAKCYGRNLATNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENN
FAVKFDGVAEIEELKTVKGTDKDGNDLDIVISRTSELKLIDKKTGITLSTNNIPYGSTIF
VKDGDKLKTGDVVCEWDPYNGVIVSEFAGKVRYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKIIPTLIVEDSKGEAIRSYNLPVGAHIMIDDGEKVKIGKVLVKIPRKSSKAGDITGG
LPRVTELFEARNPSNPAVVSAIDGVVSFGKIKRGNREIIVESKFGDIKKYLVKLSSQILV
QENDFIKAGMPLSDGSITPNDILNIKGPAAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTIFLEDQLAHKADFIEENDAIFGKKVVENAGDSTNLKEGQLITAFEL
RDENSLLRREDKALVQARDVKPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKIDTLEGLKENVIVGHRIPAGTGMRSYENIIVGSKEEFDQMMQAKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaagcaagataagaatacagtacagagattcaacaaaatctcaattggttta
gcatcaccagagtctattttagcagagtctagaggtgaggttttaaagccagaaactatt
aattatcgtacacataaaccagaaagagatggtttattctgtgagcgtatttttggtcct
gtaaaagactacgaatgtgcttgtggtaaatataaaagaattcgctataaaggtattgtt
tgtgaccgttgtggtgtagaagtaacagaaaagaaagtacgtagagatagagtaggtcac
attaatttagtggtacctgttgctcatatctggtatttccgttctttaccaaataaaata
ggttatttattaggattaccatctaagaaattagatatgattatttactacgaacgttat
gtagtaatacaagcaggtaatgctaaaaatgctgaaggagagccaattcaaaaaatggat
ttccttactgaagaagaatatctaaatattttagaagaacttcctcaagataataattat
ttagaagattcagatcctaacaagtttatagctaaaatgggtgctgagtgtttaatcgat
ttattagcacgtatagatttagattctttatcttttgaattacgtcacaaagcaaacaca
gaaacgtctaaacaacgtaaaactgaagcgttaaagcgtcttcaagttgtagaagcttta
cgtgagtctaacttaaatagagaaaaccgtccagaatggatgatcttaaaagttgtgcca
attattccgccagaattaagacctttagtgcctttagatggtggacgttttgcaacttca
gatttaaatgatttataccgtcgtgtaattatacgtaacaaccgtcttaagagacttgta
gagattaaagctccagaagtaatcttacgtaacgaaaaacgtatgttacaagaatctgta
gattcattattagataatacacgtaagtcatctgcagtaaaaacagattctaacagaccg
ttaaaatctttatcagattcacttaaaggtaagcaaggacgtttccgtcaaaacttactt
ggtaagcgtgttgattattctgcacgttcggtaattgtagtaggaccagagttgagatta
tttgaatgtggtcttccaaaaaatatggctgcagaactttacaagccattcatcattcgt
aaattaatcgaaagaggaattgtaaaaacggtaaaatcagctaaaaaaattatagacaaa
aaagagccagtagtttgggatattttggaaagcgtccttaaagggcatccagtattacta
aaccgtgcgcctacgcttcaccgattaggtattcaggcctttcagccaaaacttattgaa
ggtaaagcaatacaattacacccattagcgtgtgcagcttttaatgccgattttgatgga
gatcaaatggcagtgcatttaccgttaggaccagaagctattttagagtgtcaaatgtta
atgttggcatctcataatatcttaaatccagcaaatggagctccagtaacagtaccatct
caggatatggtacttggtctttattatatgactaagttacgtacatcaacaccagaagtt
aaagtaaaaggtgaaggcttaacattttattctgcagaagaagtaaacattgcttacaat
gaaaagcgtgtagacttaaacgcacagattaaagtacgtacaatagattttaacgcagaa
ggagaattagttcctcaaattatagaaactacaacaggtcgtgtacttttcaacgaaaaa
gtaccagctgctgcaggttatgttaaccaagtattaactaaaaaatctcttagagatatt
attggtgatattttaaaattaacaagtgttcctgaaactgcagatttcttagatgaaatt
aagacattaggttatctatttgcatttagaggtggattatcatttagtttaggagatatt
attatcccgccagaaaagcaatctatgattgatgctgccaatacgaaagtagacggtatt
aaagcaaattataacatgggacttataacaaacaacgaacgttataaccaagttattgat
atttggacatcaacaaatgcagaattgacagaattgtcaatgaaacgtattagagaagat
caacaaggatttaattcggtgtttatgatgcttgattctggagcgcgtggatctaaagaa
cagattcgccagcttacaggaatgcgtggattaatggctaagcctaaaaaatctacagca
ggaggagggtctattattgaaaatccaattttatctaactttaaggaaggtctttcaatt
ttagaatactttatttctactcacggtgcacgtaaaggtcttgccgatacagcacttaaa
actgccgatgcaggttatttaacgcgtcgtctagtagatgtatctcaagatgtaattgta
aacagtgtagactgtggtacattaagaggtgtagaagtttctgctcttaagaaaaatgat
gaagttgtagagaagctaggagcacgtgttttaggacgtattgcacttaacgatgtatat
aacccattaacagaagaattaatagtagaagcaggtgagttaattgaagacgatattgct
gcggcaattgaagcctctcctattgatgctgtagaagtacgttcaccattaagttgtgaa
gctaaaaaaggaatctgtgctaaatgttacggaagaaacttagcaactaacaaaatggtt
caacgtggtgaagcagtaggtgttgtagcagcacaatctattggagaaccaggtacacag
ttaacacttcgtacattccacgtaggtggaattgcaggtaacatttcagaagaaaataac
ttcgcagttaaatttgacggagttgccgaaattgaagaattaaaaactgtaaaaggtact
gataaagatggaaatgatttagacatcgttatatctcgtacatcagaacttaagttaata
gataagaaaacaggtattacattaagtacaaataatattccttacggttcaactatattc
gttaaggatggagataagcttaaaacaggagatgttgtttgtgaatgggatccatataac
ggtgtaattgtttcagaatttgcaggaaaagtgagatatgaaaatatcgagcaaggtgtt
acttatcaagtagaaattgatgaacaaacaggtttccaagaaaaagtaatttcagaatct
agaaacaagaaaataataccaacacttattgttgaagatagtaaaggtgaagcaattcgt
tcttacaacttaccagtaggtgcacacatcatgattgatgatggagagaaagttaagatt
ggtaaagtcttagttaaaattcctcgtaaatcttcaaaagcaggtgatattactggtggt
ttaccaagagtaacagaattatttgaagctcgtaacccttctaatccagcagtagtaagt
gcaattgatggtgttgtttctttcggaaaaattaaaagaggtaaccgtgagattattgta
gagtctaagttcggagatattaagaaatacttagtgaagttatcaagtcagattcttgtt
caagaaaatgattttataaaagcaggtatgcctttatctgatggttctattacaccaaac
gatatcttaaacataaaaggaccagcagctgtacaacaatacttagtgaacgaagttcaa
gaagtataccgtttacaaggtgtgaagattaacgataagcatttcgaagttgttgtaaga
caaatgatgcgtaaagtgagaattattgactctggagatactattttcttagaagatcaa
ttagcacataaagctgattttatcgaagaaaacgacgctatttttggtaaaaaagttgta
gaaaatgcaggagattctacaaacttaaaagaaggacagttaataacggctttcgaatta
agagacgagaattctttattacgtcgtgaagataaagcattggtacaagcaagagatgta
aaaccagcaacggcaactccaatacttcaaggtattacgagagcatcgttacaaactaaa
tcgtttatttctgcggcatcgttccaggaaacaacgaaagtacttaacgaagcagcagta
gcaggtaagattgatactttagaaggtcttaaagaaaatgtaattgtaggacacagaatt
ccagcaggaacaggaatgcgttcttacgagaacattattgtaggatctaaagaagagttt
gatcaaatgatgcaagctaaacaagaggttaactacaattag
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