Lacinutrix sp. Bg11-31: CW733_02425
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Entry
CW733_02425 CDS
T05225
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
laci
Lacinutrix sp. Bg11-31
Pathway
laci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CW733_02425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laci03019
]
CW733_02425
03009 Ribosome biogenesis [BR:
laci03009
]
CW733_02425
Enzymes [BR:
laci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CW733_02425
Messenger RNA biogenesis [BR:
laci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CW733_02425
Ribosome biogenesis [BR:
laci03009
]
Prokaryotic type
rRNA helicases
CW733_02425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AUC81047
UniProt:
A0A2K8XDS6
LinkDB
All DBs
Position
complement(538677..540557)
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AA seq
626 aa
AA seq
DB search
MSTFQELGLNEDLLKGITDLGFETPSEVQEKAIPILLNEETDLVALAQTGTGKTAAFGFP
MLQKIDIDSRTTQGLILSPTRELCLQIANEMKAYGKYCKGLNVVAIYGGSSITDQAREVK
RGAQVIVATPGRMKDMIKRRLVDITKIQYAVLDEADEMLNMGFKEDITDILSGTPDEKNT
WLFSATMPREVATIAKKFMNEPQEITVGHKNQSTDTVSHEYYMVNARDRYQALKRLADAN
PEIFSVIFCRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDIVMKQFRSRQIQMLVATD
VAARGIDVDDITHVINYQLSDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRRLKSIERI
INKKFELKEIPNGMAICEVQLMSLANKIHNTEINHEIDKYLEDINALFEETSKEELIKKF
FSVEFTRFFNYYQKSKNLNVAAGDSGRDSGRESSGSAARYFINVGEKDGFDWMKLKDFLK
EVLDLGRDDVFKVDCKDTFSFFNTEKEHQEKVLAFFTDYKHEGRFVNVEITEDKPSRGGR
GRGGSGGSGGGGRRREGGSGGDRRRSGGGDRRSSGGGDRRRSEGSGDRRRGSDDSPARSR
RSDGGDRDKGEFKTTHSRSGRSRRKD
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaagaattaggtctaaacgaagatcttttaaaaggtattacagattta
ggtttcgaaacaccatctgaagtacaagaaaaagcaatcccaatattattaaacgaagaa
acagatttagtagccttagcgcaaactggaactggaaaaacagctgcatttggttttcca
atgttgcaaaaaattgatattgatagtcgtacaacacaaggtttaatactatctcctact
cgtgaactttgtttgcaaattgcaaacgaaatgaaagcttacggtaaatattgcaaaggt
ttaaacgtggttgccatatatggtggatcaagcattacagaccaagcaagagaagtaaag
cgtggcgcacaagtaattgtagctactcctggtcgtatgaaagatatgattaagcgtaga
ttagttgatattactaaaatccaatatgcggttttagatgaagctgatgagatgttaaac
atgggtttcaaggaagatattacagatatcctttctggaacaccagacgagaaaaacaca
tggttattttctgcaactatgccaagagaagtggcaactattgcaaaaaaattcatgaat
gagcctcaggaaattactgtaggtcataaaaaccagagtacagatacagtatcgcacgaa
tactatatggtaaacgctcgcgatcgttaccaagctttaaaacgtttagcagatgctaat
ccagagatattttcagtaatattttgtagaacaaaacgtgatacacaaaaagtagcagaa
aacttaattgaagatggttacagtgcaggagctttacatggtgatttatctcaaaatcaa
cgtgatattgtgatgaagcaatttagatcgcgtcaaatacaaatgcttgttgcaacagat
gttgctgcacgtggtattgatgtagacgatattactcacgtaattaattatcaattaagt
gatgaaatagaaacctacacacaccgttctggtagaactggtcgtgctggaaaaactggt
gtttctatggttattgtttctaaaagtgaagtacgtagattaaaaagtatcgaacgtatt
attaataagaaatttgaattaaaagaaattcctaacggaatggctatttgcgaagtacaa
ttaatgtctttagcaaataaaatacacaatacagaaatcaatcatgagattgataaatac
ttagaagatattaatgcactgtttgaagagacttcaaaagaagagcttattaaaaaattc
ttctctgtagaatttacacgtttctttaattattaccaaaaatcgaaaaacttaaacgtt
gcagctggagattctggtcgcgatagtggtcgtgaatctagcggaagcgcagcacgttac
tttataaacgttggtgagaaagatggtttcgattggatgaaattaaaagatttcttaaaa
gaagtgttagacttaggtcgtgacgatgtctttaaagtagattgtaaagacacgttctct
ttctttaacacagaaaaagaacaccaagagaaagtattagctttctttacagattataag
catgaaggtcgttttgtaaacgttgaaatcactgaagataaaccaagtcgcggtggacgt
ggacgtggaggatctggtggatctggtggaggcggaagacgtcgtgaaggtggatctggt
ggagacagaagaagatctggcggtggagacagacgctcaagtggtggtggagacagaaga
cgcagcgaaggttctggagacagaagacgtggaagcgacgactctccagctcgttctaga
agaagtgatggtggagatagagataaaggcgaatttaaaactacgcactcaagatctgga
cgttctagaagaaaagattaa
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