Lacinutrix sp. Bg11-31: CW733_11455
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Entry
CW733_11455 CDS
T05225
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
laci
Lacinutrix sp. Bg11-31
Pathway
laci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
laci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CW733_11455 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laci03400
]
CW733_11455 (mfd)
Enzymes [BR:
laci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CW733_11455 (mfd)
DNA repair and recombination proteins [BR:
laci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CW733_11455 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_31
Cas3-like_C_2
SPG48
Motif
Other DBs
NCBI-ProteinID:
AUC82706
UniProt:
A0A2K8XIS4
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All DBs
Position
2534378..2537725
Genome browser
AA seq
1115 aa
AA seq
DB search
MSKLLISQTYAQSLQLQKLQTAIAKTQEKTNKTHIKGLVGSALSFVIHESFKTAEKPFLL
IFNDKEEAAFYLNDLEQLINGKDVLFYPGSYRRPYQIEETDNANILLRAEVLNRINSRKK
PAIIVTYPDALFEKVVTRKELERNTLKINVGDDLNIDFVNEVLFEYKFKRVDFVTEPGEF
SVRGGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSNEQIKKIGIIPNVENKFLDE
SRESFLKYIASKTVVFTKNVEVLFSRIDEFFIKAEDAFKSLSTEVKHAEPVELFCNSTLL
KKQLLDFNVVEFGTDSWLKPQEEILFNTTPQPAFNKQFDLLINNLNESHNNGFTNYIACV
SEQQAKRFHDIFDDVEQDVKYQTITLSLFQGFIDHGNKMVVYTDHQIFERYHKFHLKNGY
AKKQAITLKEITNLDIGDYVTHIDHGIGKFGGLKKIDVEGKKQEAIKLVYGERDVLYLSI
HSLHKITKFNGKDGKPPKVYKLGSKAWKVLKEKTKSRVKHVAFNLIKLYAKRKLEKGYQY
KEDSYLQHELEASFIYEDTPDQITATADIKADMESQRPMDRLICGDVGFGKTEVAIRAAF
KAVDNGKQVAVLVPTTILAFQHNKTFKERLKEFPVTVDYVNRFRTAKQKRETLEKLEKGH
VDIIIGTHQLVNKKVKFKDLGLLIVDEEQKFGVAVKEKLKTIKDNVDVLTLTATPIPRTL
QFSLMAARDLSVITTAPPNRYPIESNVIRFSEDTIRDAVSYEIQRGGQVFFIHNRIENIK
EVAGMIQRLVPDAKVGVGHGQMEGKKLETLMLSFMEGAFDVLVSTTIIESGLDVPNANTI
FINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDDARKRIQALEQFTALGSGF
NIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFKDLYDEDPEDKE
YVKDMTIDSDLELLFPDDYVNNIAERLNLYTQLNNFKTEEELAKFETELIDRFGELPTQV
VDLLDSVRLKWTATKLGIEKVIMKNGKLVGYFINDQQSRFYQSTNFNKLLKYVQQNPRAG
KMKEKQTRKGLRLLLTFDNIKTVEQALAVLKPILN
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaactgctaatctcgcaaacatatgcacagtctttgcaactgcaaaaactacaa
accgctattgccaaaactcaagaaaaaacaaataaaacgcatataaaaggccttgttggc
tctgcactttcgtttgtaatacacgaaagctttaaaactgccgaaaaaccttttctttta
atttttaacgacaaagaagaagctgctttttatcttaacgatttagagcaacttataaac
ggtaaagatgttttattctatcctggaagttatagaagaccataccagattgaagaaaca
gataatgctaatatactgctacgtgcagaggttttaaacagaataaactcgcgtaagaaa
cctgcaataattgtaacctatccagacgcactttttgagaaagtagttacaaggaaagag
ctggaacgtaacacgttaaaaattaatgttggcgacgatttaaatatcgattttgtaaac
gaagtattattcgaatacaaatttaaacgtgtcgattttgttacagaacctggagaattt
tcggttagaggtggtattgtagatgtattttctttttcgcatgacgaaccttacagaatt
gaattttttggagacgaagtcgatagtattagaaccttcgatgtagaaacacaactctct
aacgagcagattaaaaaaattggcattattccaaatgttgaaaacaagtttttagacgag
tctcgtgagagtttcttaaaatacattgcttcaaaaaccgtagtttttacaaaaaatgta
gaagtgcttttctcaagaatagacgaattcttcataaaagccgaagacgccttcaaaagc
ctttcaaccgaagtaaaacatgcagagcctgtagagttattctgtaattcaacattacta
aaaaaacagcttttagattttaatgtggtagagtttggtacagattcttggctaaaacca
caagaagaaatcttatttaacaccacaccacaacctgcatttaataaacagttcgattta
cttattaataacctaaacgaaagccataacaacggttttacaaattacattgcctgtgta
agcgagcaacaagctaaacgttttcatgatatttttgatgatgtagagcaagatgtaaaa
taccaaaccataacactatcactttttcaaggttttatagaccatggtaataaaatggtg
gtttatacagaccatcaaatttttgagcgttaccataaatttcatctaaaaaatggatac
gcaaaaaagcaagcgattactttaaaagaaattactaatctcgatattggagattatgtt
acacatatagatcatggaattggtaagtttggtggactaaaaaaaatagatgtagaaggg
aaaaagcaagaagctataaaattagtttatggcgaacgcgatgtattatatttaagcatt
cattctttacataaaatcactaaatttaatggtaaagacgggaagccaccaaaggtttac
aaacttggtagtaaagcatggaaggtattaaaagaaaaaaccaaatctagagttaagcac
gttgcttttaatttaataaagctttatgctaagcgcaaactagagaaaggttatcaatac
aaagaggacagttatttacaacacgagctcgaagcgtcttttatttacgaagacactcca
gatcaaattactgcaactgcagatattaaggcagatatggaaagccaacgaccaatggat
cgtttaatttgtggcgatgtaggttttggaaaaaccgaagttgccattcgtgctgctttt
aaggcggtcgataatggtaaacaagtcgcggttttagtgccaacgaccatattggcattt
caacataataaaacctttaaagagcgtttaaaagaatttcctgtaactgtagattatgtt
aaccgttttcgtactgcaaaacaaaaacgagagactttagagaagctagaaaaaggccat
gtagatattattattggcacgcatcaactggtaaataaaaaagtaaaatttaaagattta
ggtttattaattgtagacgaagagcaaaaatttggtgtcgcagtaaaagagaaattaaaa
acaataaaagacaatgtagatgtcttgactttaactgctactcctattccaaggacgctt
cagtttagcttaatggctgcacgagatttatcggtaattactactgctcctcctaatcgt
taccctatagagagcaatgttattcgttttagtgaagacaccattcgcgatgctgtgagt
tatgaaattcagcgtggcggacaagtattcttcattcataatcgtatagaaaacattaaa
gaagttgctggtatgatacagcgtttggttccagatgctaaagttggtgttggccacgga
caaatggaaggtaaaaaactagaaactttaatgctctcttttatggaaggcgcttttgat
gttttagtaagtacaactattatagaaagcggtctcgatgtaccaaatgcaaatactatt
tttattaataatgccaataattttggactaagcgatttacaccaaatgcgtggtcgtgta
ggacgaagcaacaaaaaggccttctgttattttattacgcctgagtattctgcaatgaca
gacgatgcaagaaaacgtattcaggccttagaacaatttactgctttaggaagcggattt
aatattgcgatgaaggatttagaaattcgtggtgctggagatttattaggtggtgaacaa
agtggttttataaatgaaattggcttcgacacctaccagaaaatattaaatgaagctatt
gaagagcttaaagaaaatgagtttaaggatttatatgatgaagatcccgaggacaaagaa
tatgtaaaagacatgactattgatagtgatttagaactactattcccagacgattatgtt
aataacatagccgaaagactaaacctttacacacaacttaataattttaaaactgaagaa
gagttagctaagtttgaaaccgaattaatagatagatttggagaattgccaacgcaagta
gtcgatttattagatagtgtacgcttaaaatggactgctaccaaattaggaatcgaaaaa
gtgattatgaaaaacggtaaacttgtaggttactttattaatgatcagcaaagtcgcttt
taccaaagtacaaattttaataaactattaaaatacgtacagcaaaatcctagagctggt
aaaatgaaagaaaaacaaactagaaaaggcttgcgtttattacttacctttgataacatt
aaaaccgtagaacaagcattggcagtacttaaacctatattgaattaa
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