Lactococcus protaetiae: FLP15_05400
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Entry
FLP15_05400 CDS
T06341
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lack
Lactococcus protaetiae
Pathway
lack02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lack00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FLP15_05400 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lack03021
]
FLP15_05400 (rpoD)
Transcription machinery [BR:
lack03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FLP15_05400 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
IF2_N
Sigma70_r1_1
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
QDK70689
UniProt:
A0A514Z7X2
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All DBs
Position
1089188..1090531
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AA seq
447 aa
AA seq
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MAGNKKRISQISKETGVQNRVLVEKAQEIGLLVKSHSSSIGPGEERRLLEALDVKPVVVE
KMADSDTLAKVEVKENGEVFDMKAYEKAVKDYIAKRKPLGEALDIEIMDELSVKFGIVDD
ALEDLFKQIQDAGISIVDKEGNPSPLALVTEEAEQEDLSDNAMDEIVTNVRIDDPVRMYL
KEIGRYPLISLEEETKLAEAIIAGGEEAEFAKQMLAEANLRLVVSIAKRYSGRGMQFLDL
IQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLI
RVQRNLLQDLGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIE
DDVIESPVDYTNRVLLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTR
ERIRQIEAKAIKKLRHPRRSKPLRDFM
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggaaataagaaaagaattagtcaaatttcaaaagaaactggtgttcaaaaccgt
gtgctagttgaaaaagcacaagaaattggcttacttgtaaaatcacactcaagctctatt
ggtcctggtgaagaacgccgacttcttgaggctttggatgttaagccagtggttgtagaa
aaaatggcggattcagacactttggctaaagtcgaagtcaaagaaaatggcgaagttttt
gatatgaaggcttatgaaaaggccgtgaaagattacattgcgaagcgtaaaccgcttggt
gaagcattagatattgaaatcatggatgaattgtctgtgaaatttggtatcgtggatgat
gcacttgaagatttgtttaaacaaattcaagatgcaggaatttctatcgtcgataaggaa
ggaaatccaagtcccctggcacttgtcacggaagaagcggagcaagaagatttatctgat
aatgcgatggatgagattgtcactaatgtccgtattgatgacccagtccgtatgtatttg
aaagaaataggtcgttatccattgatttctcttgaggaagaaacgaaattggccgaggca
atcattgcaggtggtgaagaagctgaatttgctaaacagatgctggctgaagcaaattta
cgcttggttgtttcaattgcaaagcgttattctggacgtgggatgcaatttttagacctc
attcaagagggaaatatgggcttgatgaaggctgtggataagtttgaccacacgaaaggt
ttcaagttctcaacttatgcaacatggtggattcgtcaggcgattacgcgtgcgattgca
gaccaagcgcgtacaattcgcattccagtgcatatggttgaaacaatcaataaattaatt
cgtgtgcaacgtaatcttttgcaagatcttggacgtgatccatcgcctgaggaaattgga
aaagagttgcatatggcaccagataaagtgcgtgaagttttaaaaattgcacaagaacct
gtatcgcttgaaacacctattggtgaagaggatgattctcatcttggtgattttattgaa
gatgatgtgattgaatctccagtagattatacgaatcgcgttttgttgcgtgagcagctt
gatgaggtcatggacaccttgactgaccgtgaggaaaatgttctgaggatgcgttttggg
ctcgatgatggtcgtatgcacaccttggaagatgttgggaagcaatttaaagtcacacgg
gaacgtattcgccagattgaagcaaaagcaatcaaaaaattgcgtcatcctcgtcgttct
aaaccattacgtgattttatgtaa
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