Lactococcus sp. NH2-7C: QJV49_04115
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Entry
QJV49_04115 CDS
T10489
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lacn Lactococcus sp. NH2-7C
Pathway
lacn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lacn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QJV49_04115 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lacn03021
]
QJV49_04115 (rpoC)
03400 DNA repair and recombination proteins [BR:
lacn03400
]
QJV49_04115 (rpoC)
Enzymes [BR:
lacn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QJV49_04115 (rpoC)
Transcription machinery [BR:
lacn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QJV49_04115 (rpoC)
DNA repair and recombination proteins [BR:
lacn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QJV49_04115 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6076
Motif
Other DBs
NCBI-ProteinID:
WGV31188
LinkDB
All DBs
Position
complement(850879..854502)
Genome browser
AA seq
1207 aa
AA seq
DB search
MVDVNKFESMRIGIASPQKIRYWSFGEVKKPETINYRTQKPEREGLFDERIFGPQKDWEC
ACGKLKGVFYKNQVCELCGVQVTTAKSRRERMGHIELAAPISHIWYFKGIPSRMGLALDM
SPRALEEVIYFASYVVIDPKETDLEKKQLLTEREYREQLLKNGFGSFVAKMGAEAIQDLL
NDVDIDKEVSELKEELKTVTGQRRVKIIRRLDVLSAFRKSGNALSWMVLNVLPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPNIIVQNEKRMLQEAVDTLIDNG
RRGRPITGAGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMAQLVKKELAANIRAAKRKVERQDSDVWDVLETVVKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKAIRLHPLACEAYNADFDGDQMAIHLPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEKGREGEGMIFATPEEVEIAMRNGYVHLHTRIGI
ATKSLNKPWTENQKDKILVTTVGKVIFNSIIPEGMPYLNEPTDVNLTTSTDDRFFMEAGQ
DIKEVLAGIDTVRPFKKGYLGNIIAEVFKRYRTTATSEYLDRLKDLGYHQSTLAGLTVGI
ADIPVVEDKHKIIDAAHKRVEQITKQFRRGLITDDERYNAVTGVWRDAKEALEKRLIDEQ
DLTNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGKIMELPIISNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVISDIATGKEMVEPLF
ERLVGRYTRKSVLHPETGEMIIADDTLISEDVARKIIDAGVKEVTIRSVFTCKTPHGVCK
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASSSDITQGLPRVQEI
FEARNPKGEAIITEVTGTVESIVEDPATRTREITVKGKTDTRSYTVGMADVLMVEEGEFI
HRGAPLIQGSIEPKHLLQVRDALSVETYLLGEVQKTYRSQGVEIGDKHIEVMVRQMLRKV
RIMDNGSTDVLPGTLMDISDFEALNETALLNGEMPATGRPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKEDHLLGLKENVIIGKIIPAGTGMFRYRNIEPLADLTNAPEVEEV
ETETVEN
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttggttgatgtaaataaatttgagagtatgcgtattggtatcgcatctccacaaaaaatt
cgttactggtcattcggtgaagttaaaaaaccagaaacaattaactatcgtacacaaaaa
cctgaacgtgaaggactctttgatgaacgtattttcggtcctcaaaaagactgggaatgt
gcttgtggaaaacttaaaggtgttttctacaaaaatcaagtctgtgaactttgtggtgtt
caagtaacaactgcaaaatcacgccgtgaacgtatgggtcatattgagcttgctgctcca
atttcacacatttggtacttcaaaggaattccatcacgtatgggacttgctcttgatatg
agtccacgtgcacttgaggaagtaatatactttgcaagttatgtagtgatagatcctaaa
gaaactgatcttgagaagaaacaactcttgactgaacgtgaatatcgtgaacaacttttg
aaaaatggttttggttcattcgttgcaaaaatgggtgctgaagcgattcaagatttgttg
aatgacgttgatattgataaagaagtttctgaactcaaagaagagcttaaaacagttact
ggacaacgtcgtgtaaaaattattcgtcgtttggacgttttgtcagctttcagaaaatca
ggaaatgctttatcttggatggtcttaaacgtattgccagttattccaccagatttgcgt
ccaatggttcaattagatggtggacgttttgccacatctgacttgaatgacttataccgt
cgtgttattaaccgtaataaccgtttgaaacgtttgatggaacttaatgctccaaatatt
atcgttcaaaatgaaaaacggatgcttcaagaagctgttgatactttgattgacaatggt
cgtcgtggtcgtccaatcactggtgctggtaaccgtccattgaaatctctttcacacatg
ttgaaagggaaacaaggacgtttccgtcaaaacttgcttggtaaacgtgttgactattct
ggacgttcagttatcgctgtaggtccaacactcaaaatgtaccaatgtggtgttccacgt
gaaatggcgattgagttgttcaaaccattcgtaatggctcaacttgttaagaaagaattg
gctgctaatattcgtgcggctaaacgtaaagttgaacgtcaagactctgatgtttgggat
gtacttgaaacagttgttaaagaacaccctgttcttcttaaccgcgcacctacgcttcac
cgtttaggtattcaagcttttgaaccagtcttaattgatggtaaagccatccgtcttcac
ccgcttgcttgtgaagcctacaacgccgactttgacggtgaccaaatggccattcacttg
ccattgtctgaagaagcacaagctgaagcacgtcttttgatgcttgctgctgaacatatc
ttgaaccctaaagatggtaaaccagtcgttacaccatctcaagatatggtccttggtaac
tactaccttactatggaagaaaaaggtcgtgaaggcgaaggaatgatttttgcaactcct
gaagaagttgaaattgcaatgcgtaatggttatgtacatttacatactcgtatcggtatc
gcaacaaaatcactcaacaaaccttggactgaaaaccaaaaagataaaatcttagtaact
actgttggtaaagttattttcaactcaatcattcctgaaggaatgccttacttgaacgaa
ccaactgatgttaacttgacaacttcaactgatgatcgcttctttatggaagctggtcaa
gatatcaaagaagttttggctgggattgatactgttcgtccattcaaaaaaggatatctt
ggaaatatcatcgctgaagtcttcaaacgttaccgtacgacagctacatctgagtacctt
gaccgtttgaaagatcttggttaccaccaatctactttggctggtttgactgtgggtatc
gccgatattcctgttgttgaagataaacataaaatcatcgatgctgcacacaaacgtgtg
gaacaaattactaaacaattccgtcgtggtttgattactgatgatgaacgttataacgct
gttacaggtgtttggcgtgatgcaaaagaagctcttgaaaaacgattgattgatgaacaa
gatttgacaaacccaatcgttatgatgatggactctggagcccgtggtaatatctctaac
ttctctcaacttgctggtatgcgtggtttgatggccgctcctaatggtaaaatcatggaa
ttgcctatcatctcaaacttccgtgaaggtctttctgtcttggaaatgttcttctcaact
cacggtgcccgtaaagggatgaccgatacggcccttaagacagctgactctggttatctt
actcgtcgtttggttgacgttgcccaagatgttatcattcgtgaagacgactgtggaact
gaccgtggacttgtaatttctgatattgctactggtaaagaaatggttgaaccactcttt
gaacgtttggtaggtcgttatactcgtaaatcagtacttcatccagaaaccggtgaaatg
attattgctgacgatactttgatttctgaagatgttgcccgtaaaattattgatgctggt
gttaaagaagtaactatccgttcggtatttacatgtaaaactccacatggtgtatgtaaa
cattgttatggtatcaacttggcaacaggtgatgctgttgaagttggtgaagctgttggt
acaatcgccgctcaatcaatcggtgaacctggtactcagttgacaatgcgtacattccac
acgggtggtgttgcgtcaagttcagatatcactcaaggtttgcctcgtgttcaagaaatc
tttgaagcacgtaaccctaaaggggaagcaatcatcactgaagtaactggtacagttgaa
tcaatcgttgaagatcctgctacacgtactcgtgaaattactgttaaaggtaaaacagat
actcgtagctacactgtaggtatggctgatgtcttgatggttgaagaaggtgagtttatt
caccgtggtgcacctttgattcaaggttctatcgaacctaaacacttgcttcaagtccgt
gatgcattgtcagttgaaacttacttgcttggtgaagtacaaaaaacttaccgttcacaa
ggggttgaaattggtgataaacacattgaggtaatggttcgccaaatgcttcgtaaagtt
cgtattatggacaacggatcaactgatgttcttccaggtactttgatggatatttctgac
tttgaagctttgaatgaaactgcgctcttgaatggtgaaatgcctgcaactggtcgccca
gtcttgatggggattactaaagcctctcttgaaacaaattcattcttgtcagctgcatca
ttccaagaaactactcgtgtccttactgatgctgcaattcgtggtaaagaagatcacttg
cttggtttgaaagaaaatgttattatcggtaagattattcctgctggtacaggtatgttc
cgttaccgtaacattgaacctttagctgatttaacaaatgctccagaagtagaagaagtt
gaaacagaaactgtggaaaactaa
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