Lactococcus sp. NH2-7C: QJV49_04120
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Entry
QJV49_04120 CDS
T10489
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lacn Lactococcus sp. NH2-7C
Pathway
lacn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lacn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QJV49_04120 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lacn03021
]
QJV49_04120 (rpoB)
03400 DNA repair and recombination proteins [BR:
lacn03400
]
QJV49_04120 (rpoB)
Enzymes [BR:
lacn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QJV49_04120 (rpoB)
Transcription machinery [BR:
lacn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QJV49_04120 (rpoB)
DNA repair and recombination proteins [BR:
lacn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QJV49_04120 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
WGV31189
UniProt:
A0AA49EXR6
LinkDB
All DBs
Position
complement(854611..858201)
Genome browser
AA seq
1196 aa
AA seq
DB search
MAGHDVKYGKHRTRRSFSRIKEVIGLPNLIEVQTLSYKNFLDEGLANVFKEMFPIDNFAG
TMELEFVGYEMKTPKYTVEEARAHDANYSAPIYVTFRLVNKETGELKTQEVFFGDFPLMT
EMGTFINNGSERLIVSQLVRSPGSYFHLKADKNGLESFGHTTIPNRGAWFELDTDAKGIG
YVRIDRTRKLTFTTMLRALGFGSDEEILELLGETQLLTDTIAKDVHKNPADTRVEEALKD
IYDRLRPGEPKTADSSRGLLVARFFDPKRYDFAPVGRYKFNKKLALKNRLLGLTLAEPIV
DPETGEILVNTDTLVTRDVLDLIEPLLDNGLGNFVVEPSDDAVIPEPITLQSIKVYSPKD
PERVVTLLSNGNPDAECRVLTPADVISNISYWLGLAEGIGKVDDIDHLGNRRIRSVGELL
QNQVRIGLSRMERVIRERMSSSENENITPQGLINIRPVTASIKEFFGSSQLSQFMDQHNP
LSELSHKRRFSALGPGGISRDRASYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYAK
VNEYGFIMSPYRRVDRVNGVVTDEVEYLTADEEDNYTVAQANSPLTEDSHFANETVMARH
TGNNIEVEASTADYMDVSPKQVIAVAAACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
WIGTGMEHQTARDSGAALLAKHAGVVEYVDGNEIRVRRTSGELDIYNITKYRRSNSGTSY
NQRPLARLGEKVEKGDIIADGPSMENGEMALGQNPLVAYMTWEGYNFEDAVIMSERLIKD
DVYTSIAIEEYESETRDTKLGPEEITREIPNVGDEALKNLDESGIIRIGAEVKDGDLLVG
KVTPKGETDPTPEERLLRAIFGEKAREVRDTSLRVPHGGGGIVHDVRVFTRENGDELPSG
VNKLVRVFIAQKRKIHVGDKMAGRHGNKGVVSNIVPMEDMPYLPDGTPIDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIATPVFDGASDEDIWDTVKEAGMADDAKTVLYDGRTGE
PFDNRISVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAANVLQEILTYKSDDVIGRTRAYEAIVKGERIPKPGLPESFRVLVKELQSLGLDMKV
LDADRNVLDLRELDEDEVMTRPDNTEITPEMLEAQEAIVAQAEAEEEALINADTEK
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgtaaaatacggtaaacaccgtacaagacgcagtttttcacgtatt
aaagaagtaatcggtttgccaaacctcatcgaagttcaaacattaagttataaaaacttc
ctcgatgaaggtcttgcaaatgtcttcaaagaaatgtttccaatcgacaactttgcgggt
acaatggaactcgaatttgttggttatgaaatgaaaaccccaaaatacactgttgaagaa
gctcgcgcacatgacgcaaactattcagcacctatctatgtaaccttccgtcttgtaaat
aaagaaactggtgaattaaaaacacaagaagtcttctttggtgacttcccactcatgact
gaaatggggacatttatcaataacggttcagaacgtttgatcgttagccaattggtacgt
agtcctggttcatacttccatcttaaagctgataaaaacggtcttgaaagttttggacat
acaacaattcctaaccgtggagcttggttcgagttagatacagatgctaaaggcattggg
tatgttcgtattgaccgtacacgtaaattaacttttacaacaatgcttcgtgctcttgga
tttggttcagatgaagaaatccttgaattgttgggagaaactcaacttttaacagacact
attgcaaaagatgttcataaaaacccagctgacactcgtgtagaagaagcgctcaaagac
atctatgaccgcttgcgtccaggagaacctaaaacagcagatagctcacgtggcttgctt
gttgctcgtttcttcgatccaaaacgttatgatttcgcgcctgttggacgttacaaattt
aacaagaaattagcacttaaaaatcgtttgcttggtttgactttggctgaaccaattgtt
gacccagaaactggtgaaattctcgttaatacagatactcttgttactcgtgatgtgctt
gatttaatcgaaccattgcttgataacggtcttggaaactttgttgttgaaccatctgac
gacgctgtaattcctgaaccaattactttgcaaagtatcaaagtttactcaccaaaagat
ccagaacgtgttgttacattgctttcaaatggtaaccctgatgcagaatgccgcgtcttg
acaccagccgatgtgatttcaaatatcagctactggctcggtcttgctgaaggaattggt
aaagtagacgatattgaccacttaggtaaccgtcgtatccgttcagtaggtgaattgctt
caaaaccaagtacgtatcggactttcacgtatggaacgtgttattcgcgagcgtatgtca
tcttcagaaaatgaaaatatcacaccacaaggtttgattaacattcgtcctgtaacagct
tcaattaaagaattctttggttcatcacaattgtcacaatttatggaccaacacaatcct
ttatctgagctttcacacaaacgtcgtttttctgccttaggacctggtggtatctcacgt
gaccgtgcttcatatgaagtacgtgacgttcactatactcactatggacgtatgtgtcct
attgaaacacctgaaggaccaaacatcggtttgattaacaacttgtcatcatatgccaaa
gtaaacgaatatggtttcatcatgtctccataccgtcgtgttgaccgtgtgaacggtgtg
gttactgacgaggttgaatatttaaccgccgatgaagaagacaactatactgttgcccaa
gcaaactcaccattgactgaagatagccactttgctaacgaaacagttatggctcgtcat
actggtaacaatattgaagttgaagcttcaacagcagactatatggacgtttcacctaaa
caggttatcgccgttgctgctgcatgtattccattcttggaaaacgatgactccaaccgt
gccctcatgggtgccaacatgcaacgtcaagcagttccgttgattgacccacatgcacct
tggattggtactggtatggaacatcaaactgctcgtgactcaggtgctgcacttcttgca
aaacatgctggtgttgttgagtatgttgatggtaatgaaattcgtgttcgtcgtacttct
ggtgaacttgatatttacaatattacaaaatatcgtcgttcaaactcaggaacttcttat
aaccaacgcccattggctcgacttggagaaaaagttgagaaaggggacatcattgctgat
ggaccttctatggaaaatggagaaatggcccttggtcaaaatccacttgttgcttatatg
acttgggaaggttataacttcgaggatgcggtaatcatgtcagaacgtttgattaaagac
gacgtttatacatcaattgccatcgaagaatatgaatcagaaacacgcgatacaaaactt
ggccctgaagaaattactcgtgaaattccaaacgttggggatgaagcactcaaaaacctt
gatgaatcaggaattatccgtattggtgctgaagttaaagatggcgacttgcttgttggt
aaagtaactcctaaaggtgaaactgatccaacaccggaagaacgtttgcttcgtgcaatc
ttcggtgaaaaagctcgtgaagttcgtgatacatcacttcgtgttcctcacggaggtggc
ggtatcgtccatgacgttcgtgtgtttacacgcgaaaatggcgatgaattgccatcaggt
gtgaataaacttgttcgtgtcttcatcgctcaaaaacgtaagattcacgttggggataaa
atggccggacgtcatggtaataaaggggtcgtttcaaatatcgttccaatggaagatatg
ccttacttaccagatggaacacctattgatatcatgttgaacccacttggggtaccatca
cgtatgaatatcggacaagttatggagctccatttaggtatggctgctcgtacacttgga
attcacattgcaactccagtgtttgatggagcatctgatgaagatatctgggatactgtt
aaagaagctggaatggctgatgatgcgaaaacagtcctttatgacggacgtactggtgaa
ccatttgataaccgaatttcagtcggtgtcatgtacatgattaaacttcaccacatggtt
gatgacaaactccatgctcgttcagttggtccttactcactcgttacccaacaaccgctc
ggtggtaaagcacagttcggtggacaacgttttggggaaatggaagtttgggcgcttgaa
gcctatggtgctgccaatgttcttcaagaaatcttgacttacaaatcagatgacgtgatt
ggacgtacgcgcgcttatgaagcaattgttaaaggtgaacgtattcctaaaccaggtctt
cctgaatcattccgcgtattggttaaagaattgcaatcacttggtcttgatatgaaagtc
cttgatgctgaccgtaatgttcttgacttacgtgaactggatgaagatgaagtaatgact
cgtccagataatacagaaattactcctgaaatgcttgaagcacaggaagctattgttgca
caagcagaagctgaagaagaagctttgattaacgctgatactgaaaaataa
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