Lactococcus sp. NH2-7C: QJV49_09790
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Entry
QJV49_09790 CDS
T10489
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lacn Lactococcus sp. NH2-7C
Brite
KEGG Orthology (KO) [BR:
lacn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lacn03019
]
QJV49_09790
03009 Ribosome biogenesis [BR:
lacn03009
]
QJV49_09790
Enzymes [BR:
lacn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QJV49_09790
Messenger RNA biogenesis [BR:
lacn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QJV49_09790
Ribosome biogenesis [BR:
lacn03009
]
Prokaryotic type
rRNA helicases
QJV49_09790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
WGV29813
LinkDB
All DBs
Position
1942143..1943483
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AA seq
446 aa
AA seq
DB search
MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF
QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS
QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML
VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN
PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI
AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMG
VTFQPKAIKDGEIVDSYDRDRREKRTKKQDEISTKTIGALKKGKKHVKPGYKRAIKWQIE
EDNKKKRRAERNKNARKTRDSRKQSF
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacagactttaattttaaagattatattaaccaaacgttagagaatatcaaa
tttgaaaaaccaactgaagtacaagaaaaattgattccaattgttctctcaggccgtgac
ttggtaggggaatcaaaaactggttcaggaaaaacacacacttttttactcccaattttc
caaaaaattgatactgatcttgatgaagtgcaagcagtcattacggctccttcacgtgaa
ttagctactcaaatttacaaagcagctcaagaatttacaaaagttaatgacaagcttcgt
gtttcaaactttgtcggtgggactgataaggcccgtcaaatcaaaaaattggaatcatca
caaccacatgtcgtaattggaacaccaggtcgaatccatgacttaatcaaatctaatgct
ttaattgtgcatactgctaatacttttgttgtcgatgaagcggatatgacgcttgacatg
ggatttttggcagatgttgaccaaattgcttcaagctttggtaaacgcgtgcaaatgctc
gttttctcagcaactattcctcaaaaacttcaaccatttttgaaaaaatatttgcataat
cctgttatgcaaaaaatcgccaataagacagtaatttcagatacaatcgaaaattggctc
gtttctactaaaggaagttcacataatcaacttttgctccaattgacaaaagcaacgaat
ccttacatggcaatgatttttgccaataccaaaggtcgtgttgatgacattcatcatttc
ttgacaagtaacggacttaaagttgcaaaaattcatggtgatgtaccgccacgtgaacgt
aaacgtatcatgaattcaattaaaaatttggattatcaatatgttgtggcaaccgatatt
gccgcgcgtggaattgatattgaaggtgtatcacacattatcaatgatgaaattccaaaa
gatttaactttctttgttcaccgagtgggtcgttctggccgtaatggattacaaggaaca
gctattacgctctatagtccttctgatgattcaagcattcgtgagattgaaaaaatgggt
gttacattccaaccaaaagccattaaagatggtgagattgttgattcctatgaccgtgac
cgtcgtgaaaaacggacgaaaaaacaagatgaaatttcaacaaaaaccattggtgccctt
aaaaaaggtaaaaaacacgttaaaccaggttataaacgtgcaattaaatggcaaattgaa
gaagataacaagaaaaaacgccgtgctgagcgtaataaaaatgcccgtaaaacacgtgat
tctcgtaaacaaagtttctaa
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