Lacibacter sediminis: H4075_01185
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Entry
H4075_01185 CDS
T06746
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lacs
Lacibacter sediminis
Brite
KEGG Orthology (KO) [BR:
lacs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lacs03009
]
H4075_01185 (rlmD)
Enzymes [BR:
lacs01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H4075_01185 (rlmD)
Ribosome biogenesis [BR:
lacs03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H4075_01185 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
MTS
Cons_hypoth95
Methyltransf_25
UPF0020
Methyltransf_15
PrmA
E2R135
Methyltransf_12
N6_N4_Mtase
TRM5-TYW2_MTfase
VTT_dom
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
QNA44841
UniProt:
A0A7G5XH88
LinkDB
All DBs
Position
256531..257997
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AA seq
488 aa
AA seq
DB search
MRKKQKIRILEQVKVEDYAAEGKSIARVEGKVVFIEGAVPGDVVNVQLGKSKKDWAEGKA
VHFHEYSPERTTPFCDHFGLCGGCKWQMLPYEKQLEYKQREVEQNLKRIGRIELPELLPI
VGAKQTKYYRNKLEYTFSNKRYLTRDELLKKDEERAKAAQASVSTEEIEPAPPPADVALG
FHVPKIFDKVIDIHTCYLQQEPNNAIRNFVREFAKKHGFSFYDIKAHEGWLRTMIFRMTT
TGEVMVNITFGYEDVPNRELLFNAMLAEFPEITTLLYTINPKWNDSIYDLQPETFFGSGH
VNEKLEEFVFKIGPKSFFQTNTKQGEELYKVTRDFAKLTGNETLYDLYCGTGSIGIFCSK
GAKKIIGVEAVAEAIEDAKLNAQTNGLTNTSFYAGDVIDICNDDFFAAHGRPDVIITDPP
RVGMHEKLVKKLLEIEAPRIVYVSCNPATQARDLQLLNEKYVVEQLQPVDMFPHTHHIEN
VAALVLRK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
gtgagaaaaaaacagaaaatcaggatactcgaacaggtaaaggtggaagattatgccgcc
gaaggtaaatcgatagcccgtgtagaggggaaagtagtgtttattgaaggcgctgtaccc
ggcgatgtggtgaatgttcagcttggtaaaagtaaaaaggactgggccgaagggaaggcg
gtgcactttcatgaatattctcctgagcgtaccacccctttttgcgatcatttcggtttg
tgcggcggttgcaaatggcaaatgctgccgtacgaaaagcagctggagtacaagcaacgg
gaagtagagcaaaacctgaaacgtatcggccgtattgagttgcctgaactgttgcccata
gttggagcgaaacagacaaaatactatcgtaacaaactcgaatacacgttcagcaataag
cgctatttaacccgtgatgaattgctgaaaaaagacgaagagcgggcgaaagcagcacag
gcaagcgtatcaactgaagaaattgaacctgctcctccgcccgcagatgttgcgttgggt
tttcacgttcccaaaatttttgataaggtcatcgatatacatacctgctacctgcagcag
gagcccaacaatgcgatccgcaattttgtaagagagtttgcgaagaagcatggtttttcg
ttttatgatataaaggcacatgaaggctggttacgtaccatgatcttccggatgaccaca
accggtgaagtgatggtgaatatcacctttggttatgaagatgtacccaaccgtgaatta
ctctttaatgcaatgcttgcagagtttcctgagatcacaaccttgctttacaccatcaat
cctaaatggaacgatagtatttatgatctccaaccggaaacgtttttcggcagtggtcat
gtgaacgaaaagctcgaggaatttgtatttaagatcggtcccaagtcattttttcaaacc
aataccaaacaaggcgaagagttatataaagtaacccgtgattttgcaaagcttacgggc
aacgaaaccttgtatgatctgtattgtggtacaggcagcattggtattttctgtagcaaa
ggggctaagaagatcatcggtgtggaagctgtggcagaagcaattgaagatgccaagctg
aatgcacagacaaatggcttaaccaacacttcgttctatgcaggtgatgtgatcgatatc
tgcaacgatgatttttttgcagcacatggcaggcccgatgtgatcattaccgatccgccc
cgtgtaggcatgcatgaaaagctggttaagaaattacttgagatagaagcgccacgtatt
gtgtatgtaagctgcaatcctgccacgcaggcacgagatcttcaactgctcaatgaaaaa
tatgtggtggagcaactgcaaccggtggatatgtttccgcatacgcaccatattgaaaat
gtggctgcgttggtattacgcaagtaa
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