Lacibacter sediminis: H4075_01850
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Entry
H4075_01850 CDS
T06746
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lacs
Lacibacter sediminis
Brite
KEGG Orthology (KO) [BR:
lacs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lacs03016
]
H4075_01850
Enzymes [BR:
lacs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H4075_01850
Transfer RNA biogenesis [BR:
lacs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H4075_01850
Prokaryotic type
tRNA splicing ligases
H4075_01850
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QNA44959
UniProt:
A0A7G5XHK6
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All DBs
Position
393390..394835
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AA seq
481 aa
AA seq
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MSKLKISGKELRAIGYPEGPVISVAMNVMQKNYKHHTKEEVMELLKAVLASPANYLDDAV
LALIAKQLMPEEKESEGELSLNQNGIQFNVFGSEHIEQSAMHQMYTAAKLPVAVAGALMP
DAHHGYGLPIGGVLATENAVIPYGVGVDIGCRMCLSIFDIDPKDLVQKEAFFAREIGEAT
LFGSGAQFKQSEDHEVMDNELFFELPLLKNLHGRAWKQLGSSGSGNHFVEFGVVEIAEKD
EVLGVEAGKYVGLLSHSGSRALGANIANHYTKLAISKRRLPQDAKNLAWLTLDEEEGMEY
WLAMNLAGDYASACHHVIHQKIAKQLGRKPIKRVENHHNFAWKEKWEGRDVIVHRKGATP
AGKDVLGIIPGSMTAAGFIVKGKGEMASVNSASHGAGRLMSRSRAMQSVTHKALKDELKK
HGVKLMGGGLDEAPFAYKDIELVMQSQQSLVDVVGKFTPKIVKMDGPSIKPWQKTREVEG
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagttaaaaatatcaggaaaagaattgagagcgattggctacccggaaggaccg
gtgatcagcgtcgccatgaatgtgatgcaaaaaaattacaagcatcacacaaaggaggaa
gttatggaactgttgaaagcagtgttggcatcgcctgcaaattatttagatgatgccgtg
ctggcattgatcgcaaaacaattgatgccggaagaaaaggaaagtgaaggagagttgtcg
ttgaatcaaaacggtattcaattcaatgttttcggaagtgaacatattgaacaaagtgct
atgcaccagatgtacactgcagcaaaattacccgtagcagtagccggtgccttaatgccc
gatgcacatcatggatatggattaccgatcggaggcgtgttggcaacggagaatgcagta
ataccttatggtgttggtgtggatattggttgcagaatgtgtttgagcatttttgatatc
gatccgaaagacctggtgcagaaagaagcattctttgctagagaaattggtgaagctact
ttgtttggaagtggcgcacagttcaagcaaagcgaagaccatgaagtaatggataacgaa
ttgttttttgaattgccgttgctgaaaaatctgcacggtcgtgcatggaaacaattaggc
agcagcggaagcggaaatcactttgttgaatttggtgtagtggaaattgcagagaaagat
gaagtgctgggtgtggaagcaggcaagtatgtcggactgttgagtcactccggttcaaga
gcgttgggtgcaaatatcgctaaccattataccaaacttgcgatcagtaaaagacgttta
ccacaggatgcaaaaaatcttgcgtggttaacacttgatgaagaagaaggaatggagtat
tggttagcgatgaacctggctggtgattatgcaagtgcctgtcaccatgtgattcatcaa
aagattgcgaagcaacttggtcgaaaaccaataaagcgtgtagagaaccatcacaacttt
gcatggaaagaaaagtgggaaggaagagatgtgatcgttcaccgtaaaggtgcaacacct
gccggtaaagatgtactgggtatcattccgggaagtatgacagccgcaggctttatagta
aaaggtaagggtgaaatggcatcggtgaattctgcttcacatggagccggacgtttgatg
agtcgttcaagagccatgcaaagcgttacgcacaaagcattgaaagatgaattgaaaaag
catggcgtgaaattaatgggcggcggattagatgaagcaccttttgcttacaaggatatt
gaactagtgatgcagagtcagcaatcgttagttgatgttgttggaaaatttacacctaag
atcgtgaagatggatggaccgagtataaagccttggcagaagacgagggaagtggaaggg
gagtga
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