Lacibacter sediminis: H4075_06480
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Entry
H4075_06480 CDS
T06746
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lacs
Lacibacter sediminis
Pathway
lacs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lacs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H4075_06480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lacs03021
]
H4075_06480 (rpoC)
03400 DNA repair and recombination proteins [BR:
lacs03400
]
H4075_06480 (rpoC)
Enzymes [BR:
lacs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H4075_06480 (rpoC)
Transcription machinery [BR:
lacs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H4075_06480 (rpoC)
DNA repair and recombination proteins [BR:
lacs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H4075_06480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QNA45835
UniProt:
A0A7G5XK32
LinkDB
All DBs
Position
1490843..1495132
Genome browser
AA seq
1429 aa
AA seq
DB search
MAFRKDNRQRPTFSKITIGLASPDTILERSFGEVLKPETINYRTYKPERDGLFCERIFGP
VKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIKLVVPVVHIWYFKSLPNKI
GYLLGVSSKKLETIVYYERYVVIQPGVKENMAMGDLLTEEEYLDLLDTLPKDNQYLPDED
PQKFIAKMGAEAVHDMLQRIDLDQLSYDLRNAAATETSQQRKADALKRLSVVEAFRDANL
RITNRPEWMVMQYIPVIPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLLEIKAP
EVILRNEKRMLQEAIDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKRVD
YSGRSVIVVGPEMKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSARKLVDKKEAIV
WDILENILKGHPIMLNRAPTLHRLSIQAFQPKLIEGKAIQLHPLVCSAFNADFDGDQMAV
HVPLSNAAVLEAQLLMLASHNILNPQNGQPITLPSQDMVLGLYYISKGKKTTDTEIVKGQ
GKAFYSAEEVIIAYNEKQVDLHAWIKVKANVRDAETGQLTNKLIETTVGRVIFNQFVPKE
VGFVNALLTKKNLREIIGDIIEITNVPKTAKFLDDIKTLGFRTAFQGGLSFNINDLIIPE
VKEQLVDNAQGEVNEVWDSYNMGLITNNERYNQIIDIWSRVDTRVTETLIREMAADKQGF
NSVYMMLDSGARGSKQQVKQLAGIRGLMAKPRKSGSTGSEIIENPVLSNFKDGLSVLDYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVIKDEDCGTLRGIATSALKDNEDIIE
PLSDRIEGRTSLHDVYDPISDELIVAAGQEISPAIAKKIEDRGIETVDIRSVLTCESKRG
VCVKCYGKNLATGVVAQKGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSASVESTLPAK
FDGTIQFDGLRTVTTTNNEGEKVQLVIGRTGEVRIMDVKNDRLLITNNVPYGSTLAVKDG
QQVKKGDVLCTWDPFNNVVVAEIAGTIKFENILDGITFREEADEQTGHREKVVIETKDKT
KIPALLVEGKEIKSYNLPVGSHIVIEEGEEVIAGQVLVKIPRVLGKLRDITGGLPRVTEL
FEARNPGNPAIVSEIDGVVTFGNIKRGNREIIVTSKDDVVKKYLVPLTRQILAQEGDFIK
AGVPLSDGQIAPADILTIKGPFAVQEYVVNEIQEVYRLQGVRINDKHIETIVRQMMKKVE
IIDAGDTKFLEEDLVDRFEFNEENDRIFDKKVVTEPGDSHKFRPGQIVTLREFREENSVL
RRADKKLVEVRDAHPATAQPVLLGITKASLGVQSWISAASFQETTKVLSTAAIEGKTDDL
LGLKENVITGHPIPAGTGLREFENMIVGSKEEYELLLTTKEAMSFDEEE
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggcattcagaaaagacaaccgtcagaggcctacgttttcaaagatcaccattggtctg
gcttctcctgatacaatcctggagcgtagctttggtgaagtattaaagccggaaacaatc
aactatcgtacttataaacctgaacgtgatggtttgttttgcgaaagaattttcggacca
gtaaaagatttcgaatgtgcctgcggtaagtacaagcgtatccgttataagggtattgtg
tgcgaccgttgtggtgttgaagtaacagaaaagaaagtgcgtcgtgagcgtatgggtcac
atcaaattggtggtgcctgttgtacacatctggtatttcaaatcattacctaacaaaatc
ggttacctgttaggtgtaagctctaagaaattagagaccattgtatactacgagcgctat
gtggttattcaacccggcgtaaaagaaaatatggcgatgggcgatcttcttactgaagaa
gagtacctcgatctgttagatacattaccaaaagataaccagtacctgcctgatgaagat
cctcagaaattcattgcaaagatgggtgctgaagctgtgcatgatatgttgcagcgtatt
gatctcgatcaattgagctacgacttacgtaatgctgctgcaactgaaacttcacaacaa
cgtaaagcagatgcgttaaagcgtttgagcgttgtagaagctttccgtgatgcaaacctc
cgcattacaaaccgtcctgaatggatggttatgcaatacatcccggttattccaccggaa
cttcgtccgcttgttcctttggatggtggtcgttttgcatcatcagatctgaatgatctt
tatcgtcgtgtaattatccgtaataatcgtttgaaaagattattggagatcaaagctcct
gaagtaatccttcgtaacgagaaacgtatgttgcaggaagcgatcgattcattatttgat
aactcaagaaaatcaaatgctgtaaaggccgaaggcggtcgtgcattgaaatcattgagt
gatgtattgaaaggtaaacaaggtcgtttccgtcagaacttgcttggtaaacgtgttgac
tattccggtcgttcggttatcgtggtaggtcctgaaatgaaattgcatgagtgcggtctt
ccaaaagatatggctgctgaattgtttaaaccattcatcatccgtaagctgattgaaaga
ggtatcgttaaaacagtgaagtctgcacgtaaactcgtagataagaaagaagccattgtt
tgggatattcttgaaaatatattgaaaggtcacccgatcatgttgaaccgtgcccccacg
cttcaccgtttgtcgattcaggccttccaacctaaattgattgaaggtaaagccattcaa
cttcacccgctcgtgtgttctgcgttcaacgccgatttcgatggtgatcagatggcggta
cacgttccgttgagcaatgctgctgtattggaagctcagttattgatgcttgcatcacac
aacatccttaacccgcagaacggtcagccaattactcttccttctcaggacatggtactt
ggattgtactatatttctaaaggcaagaaaacaactgatactgaaatcgtaaaaggtcag
ggcaaagcattctattctgcagaagaggtaatcattgcttacaacgagaagcaggttgat
cttcatgcatggattaaagtaaaagccaacgtacgtgatgcagaaacaggccagttaaca
aataagttaattgaaacaactgttggtcgtgtgatctttaaccagtttgtaccaaaagaa
gttggtttcgtaaacgctttattaacgaagaagaaccttcgtgaaatcattggcgatatt
attgaaatcaccaacgttccaaaaacggctaagttccttgatgatatcaagacacttggt
ttccgtacagccttccagggtggtttgtcgttcaacattaacgatctcatcattcctgaa
gtgaaagaacaattggtcgataatgcacaaggtgaagtaaacgaagtttgggatagctat
aacatgggtcttatcaccaacaatgaacgttacaaccagatcatcgatatctggagtcgt
gttgatacccgtgtaactgaaacgttgattcgtgaaatggctgctgataagcaaggtttc
aactctgtgtacatgatgcttgattcaggtgcccgtggtagtaagcagcaggtaaaacag
ctcgccggtatcaggggtctgatggccaagccccgtaagagtggttctacaggaagcgag
atcatcgagaatcctgtattgagcaactttaaagatggcttgagtgtattggattacttt
atctctacgcatggtgcccgtaaaggtcttgcagatactgccttgaaaacagcagatgcc
ggttacttaacccgtcgtttggttgacgttgcgcaggatgttgttattaaagatgaagat
tgcggaacattgcgtggtattgcaacaagtgcattgaaagataacgaagatattattgaa
ccattgagcgatcgtattgaaggacgtacatcattacacgatgtgtatgatccgatttca
gacgaactcattgttgccgctggccaggaaatttctcctgctattgcgaagaagatcgaa
gacagaggtattgaaactgttgatatccgttcagtacttacctgcgaaagcaagcgtggt
gtgtgtgtgaagtgttatggtaaaaacctggctacaggtgtggttgcacaaaaaggtgat
gctgtaggtatcatcgctgcgcaatcaattggtgagcctggtacacagcttacactgcgt
accttccacgtgggtggtgttgcgggctctgcatcagtagaatctacattgccggctaag
tttgacggaacgatccagttcgatggtttacgtactgtaacaactactaataacgaaggt
gagaaagtacagctggtaatcggtcgtaccggtgaggtgcgtatcatggatgtgaagaat
gatcgtttattgatcaccaacaacgttccttacggttcaacattggcggtgaaagatggt
cagcaagtgaagaaaggtgatgtgctttgtacatgggatccgttcaacaacgtagtagtt
gctgaaattgccggtacaattaagtttgaaaacattcttgatggtatcacattccgtgaa
gaagccgatgaacaaacaggacaccgtgagaaagtggttatcgaaacaaaagataaaaca
aagatccctgcattgctggttgaaggcaaagagatcaagtcttacaacttgcctgttggt
tcacacattgtgatcgaagaaggcgaagaggtaattgccggtcaggtgttggtgaaaatc
ccacgtgtacttggtaagcttcgtgatatcaccggtggtcttccacgtgtaactgaattg
tttgaagctcgtaacccaggtaaccctgctatcgtttctgaaattgacggtgtggtaacc
tttggtaatatcaagcgtggtaaccgtgagatcattgtaacaagtaaggatgatgttgtg
aagaagtacttagtacctcttactcgccagatccttgcacaggaaggtgatttcattaaa
gccggtgttccgttaagcgatggacaaattgctcctgcagatatcctcactatcaaaggt
ccgtttgctgtacaagagtatgtggtgaatgaaatccaggaagtttaccgtttacaaggt
gtaagaattaatgataagcatattgaaaccatcgttcgtcaaatgatgaagaaagttgag
atcattgatgcaggtgataccaagttccttgaagaggatctggttgatcgctttgagttc
aatgaagaaaacgatcgcatcttcgataagaaagtggttactgaacctggcgacagtcat
aagttccgccctggccagatcgttacactccgtgagttccgtgaagagaacagcgtactc
cgccgtgctgataagaagctggtggaagtaagagatgctcatcctgcaactgcacaaccg
gtattgcttggtattaccaaagcatcattgggtgtacaaagctggatctctgctgcatcg
ttccaggaaacaacaaaagtgttgagtacagctgcaattgaaggtaaaactgatgattta
ttaggcttgaaagagaacgtaatcacaggtcacccgatccctgcaggtacaggcttacgt
gaattcgaaaacatgatcgtaggtagcaaggaagaatatgaattgctccttacaaccaaa
gaagcaatgagcttcgatgaagaagaataa
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