Lacibacter sediminis: H4075_10290
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Entry
H4075_10290 CDS
T06746
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
lacs
Lacibacter sediminis
Pathway
lacs03030
DNA replication
lacs03430
Mismatch repair
lacs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lacs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H4075_10290
03430 Mismatch repair
H4075_10290
03440 Homologous recombination
H4075_10290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lacs03032
]
H4075_10290
03400 DNA repair and recombination proteins [BR:
lacs03400
]
H4075_10290
Enzymes [BR:
lacs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H4075_10290
DNA replication proteins [BR:
lacs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H4075_10290
DNA repair and recombination proteins [BR:
lacs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H4075_10290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
DEDDh_C
DNA_pol_A_exo1
RHD_DNA_bind
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
QNA46534
UniProt:
A0A7G5XM31
LinkDB
All DBs
Position
2411800..2413164
Genome browser
AA seq
454 aa
AA seq
DB search
MLYAITDTETTGGYAASNGITEIAVYIHDGQQIVDSFETLVNPHQPIPRFVQSLTGITDE
MVQLAPSFEEIAPRLMELFQGKVFVAHNVNFDYSFVNHQLQSLGYNLNCKKLCTVRYARK
IFPKLASYSLGNLCRHFEIPLYNRHRAAGDARATVQLLELLRKNDVNNHLHTMLGKQSKE
QYLPLHLNKEDIDQLPLTPGVYYFHDAKDKIVYVGKALQLKKRVTSHFSNNKPSRQKQEF
QRNIHRISYQQCGTELMASVLETIEIKRLWPKYNRAIKGYEASYGLYVYEDGNGYMRLAV
DRKHKHLPAVHLFYSRYEGVTELKRLVKEFELCNKLCFIDRSTDPVCSAEGCKGACHGTE
TATDYNQRVQKAVDQLKQELPSFAIRERSYFNEKDSCILMEGGRFYGMGYVPTEFDFAAK
DELRNQLQEYPEYDFVRNIIKRYALEQPDKVVWL
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgctttacgctattacagatactgagacaacaggggggtatgcagcttcaaacggtata
acggagatagcagtttatatccatgatggccagcagattgtggatagctttgaaacgctg
gtgaaccctcatcagcccattcccaggttcgtacaatccttaacaggaattacagatgag
atggtgcaactggctccttctttcgaggaaattgctccacgattgatggagcttttccag
ggaaaggtatttgtggcgcataacgtgaacttcgattattcgtttgttaatcatcaacta
caatcgctcggttataatctgaactgtaaaaagctatgtaccgtccggtatgcaagaaag
atctttccaaaactggcatcgtacagcctcgggaacttatgcaggcattttgaaattccg
ctttataaccgacacagggctgcaggtgatgcaagagcaaccgttcaactgctggaattg
ttgcgaaaaaatgatgtgaataatcatttgcataccatgcttgggaagcaatcgaaagag
caatacctgccactgcatttgaacaaagaagatattgatcagttgccactcacgcccggt
gtatattattttcatgatgcaaaagataaaattgtttatgtgggcaaagcattgcagtta
aagaagcgtgtaacaagtcatttttccaataataagccttcacgacagaaacaggaattt
caacgaaacattcatcgtatttcttaccagcaatgtggcacagagttgatggcttcggtg
ctggagacaatcgagatcaaacgactatggccaaagtataaccgggccattaaagggtat
gaagccagctacggtttgtatgtatatgaagatggaaatgggtatatgcggttagctgtt
gacaggaagcataaacatctcccggctgtgcatttgttttacagcagatacgaaggtgta
acagaattaaagcgattagtaaaggaattcgagttgtgcaataaactttgttttattgat
cggtcaaccgatcctgtttgcagtgctgaaggatgcaaaggggcttgccatggtaccgaa
actgcaactgactacaatcaacgggtacaaaaagcggttgaccagttaaaacaggaattg
ccaagtttcgctatcagggagcgatcttattttaatgaaaaagacagttgcatcttaatg
gaaggtggccgtttttacggaatgggatatgtacctacagaatttgattttgctgcaaaa
gatgaactgcgtaatcaattgcaggaatatcctgaatatgattttgtgcgaaacatcatt
aaacgatatgctttagagcaaccggataaagtggtttggttgtaa
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