Lacibacter sediminis: H4075_14160
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Entry
H4075_14160 CDS
T06746
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lacs
Lacibacter sediminis
Pathway
lacs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lacs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4075_14160 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lacs03019
]
H4075_14160 (pnp)
03016 Transfer RNA biogenesis [BR:
lacs03016
]
H4075_14160 (pnp)
Enzymes [BR:
lacs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
H4075_14160 (pnp)
Messenger RNA biogenesis [BR:
lacs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H4075_14160 (pnp)
Transfer RNA biogenesis [BR:
lacs03016
]
Prokaryotic type
tRNA degradation factors
H4075_14160 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
QNA43219
UniProt:
A0A7G5XCL6
LinkDB
All DBs
Position
complement(3322316..3324493)
Genome browser
AA seq
725 aa
AA seq
DB search
MLSQPISKSFDLGGGRIVTIETGKLARQADGAVTVRQGNCIILATVVANKEPREGQDFFP
LSVDYQEKFASAGRIPGSFFKREARLNDYEVLTSRLVDRALRPLFPEDYLCDVQVLISLV
SSDAEVMPDALACLAASAALAVSDIPIKEIISEVRIANVDGEMVINPTRSQLARATSEFL
IAATEKNLMMVEGEAKECSEEDLVNALQMAHDAIRIQIKAQAELRDAKGVTGKREYKKPE
GNEEINQKVITFAKEKVYAISKAGSAKNERSEAYSKLKEELIASLGEEATDVEKKLAKKY
YEDLKWEVVRDMILEDRVRLDGRKLDEVRPLAMEIEPLPTPHGSALFTRGETQSLTTVTL
GTKLDELLVESAANSNYSKFFLHYNFPPFSTGEVKMMRGAGRREIGHGMLAQRSLKQMMP
GSEYPYTVRVVSDILESNGSSSMATVCAGSLALMDAGVPVQKHVSGVAMGLITRGDGKYA
ILTDILGDEDHLGDMDFKVTGTREGICGVQMDIKVDGLSMDVMREALNQAKAGRLHILDA
MYECMPEARPEVKPHAPRMEKLIIDKEFIGAVIGPGGKVIQEIQRETGTTITIEEVGNYG
EVSIFSQEKTGLDKAVAWVKGIVMVPEVGAVYEATVKGIKEFGAFVEFLPKKEGLLHISE
ISWKRLDSMEGVLNVGDVVKVKLIGLDPRTGKFKLSRKALMPKPDAAPRPQVQPRQDENN
GEERL
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgttatcacaacctatcagtaaatcattcgatctgggtggtggccgcatcgttaccatt
gaaaccggtaaacttgcccgccaggcagatggtgctgtaactgttcgccagggcaattgt
attattctggcaacagttgtagccaataaagaaccaagagaaggccaggattttttccca
ttgtcagtagattaccaggaaaaattcgcttctgccggtcgtattccgggttcatttttt
aaacgtgaagcaagattaaacgattacgaagttcttaccagtcgtttggttgaccgtgct
ttacgccctttatttcctgaggattatttatgcgatgtacaggtgttgatcagcctcgtt
tcatctgatgcagaggttatgcccgatgcattggcttgtttggctgcatctgcagcgtta
gctgtttcagatattccgatcaaagaaattatttctgaagtgcgtattgcaaatgttgat
ggcgaaatggtgatcaacccaacccgttcacaattagcaagagcaacttccgaattcctc
atcgcagctactgaaaagaacctgatgatggtggaaggcgaagcaaaagaatgcagtgaa
gaagacctggtgaatgcattgcaaatggcacatgatgctatccgcattcaaatcaaagca
caggcagaattaagagatgcaaaaggtgttacaggaaaacgtgagtacaaaaagcctgaa
ggtaacgaggagatcaaccagaaggtgatcactttcgcaaaagaaaaagtatacgctatt
tcgaaagcgggcagtgctaagaacgaacgcagtgaagcttacagcaaactgaaagaagaa
ttgattgccagccttggtgaagaagcaactgatgttgagaaaaaattagccaagaaatat
tacgaagatctgaaatgggaagtggtgcgtgatatgatccttgaagatcgtgtgcgtttg
gatggccgtaagttagatgaggtgcgtccgcttgcaatggaaattgaaccattgccaacg
ccacacggttcggcgttgtttacacgtggcgaaacacaatcattaacaacagttacatta
ggtactaagcttgatgaattgttggtggagagtgctgctaacagcaactattcaaaattc
ttcctgcattataatttccctccattctctacaggtgaagtaaaaatgatgcgtggtgcc
ggtcgtcgtgaaattggtcatggtatgcttgcacaacgctcattaaagcaaatgatgcct
ggtagcgaatatccatacactgttcgtgtagtgagtgatattcttgaatcaaacggttca
tcatctatggcaaccgtttgtgccggttcattggcattgatggacgcaggtgttccggtg
caaaaacacgtgagtggtgttgcaatgggtttgattacacgtggtgatggtaagtatgcg
atcttaactgacatccttggtgatgaagatcatcttggtgatatggactttaaagtaaca
ggtacacgtgaaggtatttgcggtgtgcagatggatattaaagttgacggtttgagcatg
gatgtaatgcgtgaagcattgaaccaggcaaaagctggtcgtttgcacattcttgatgca
atgtatgagtgtatgcctgaggcacgtcctgaggtgaagccacatgcaccacgtatggag
aaactgatcattgataaagaatttattggtgcagttatcggacccggtggtaaagtgatc
caggaaattcagcgtgaaacaggtacaacaattacaattgaagaagtaggtaactacggt
gaggtaagcatcttctcacaagagaaaacaggattggataaagctgtggcttgggtgaaa
ggtattgtaatggttccggaagtaggtgctgtatatgaagcaaccgtaaaaggaattaaa
gaattcggcgcatttgttgaattcctgccaaagaaagaaggtttgttacacatcagtgaa
ataagctggaaacgtttagacagcatggaaggcgtattgaatgttggtgatgttgtgaaa
gtgaaattgattggtttagatcctcgcacaggcaaattcaaacttagccgcaaagccttg
atgccgaaaccagacgcagcaccaagaccacaggttcagccaagacaagatgagaacaat
ggcgaagagcgtctttaa
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