Lacibacter sediminis: H4075_14295
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Entry
H4075_14295 CDS
T06746
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lacs
Lacibacter sediminis
Pathway
lacs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lacs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4075_14295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lacs03019
]
H4075_14295
03009 Ribosome biogenesis [BR:
lacs03009
]
H4075_14295
Enzymes [BR:
lacs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H4075_14295
Messenger RNA biogenesis [BR:
lacs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H4075_14295
Ribosome biogenesis [BR:
lacs03009
]
Prokaryotic type
rRNA helicases
H4075_14295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
SNF2-rel_dom
CMS1
UTP25_NTPase-like
ATP-grasp_6
Phage_tudor
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QNA43245
UniProt:
A0A7G5XCP2
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All DBs
Position
3350563..3352281
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AA seq
572 aa
AA seq
DB search
MNTFEALGLDERLMKAISELGFTTPTPIQEKAIPVLLSGTTDLIGLAQTGTGKTAAFGLP
LLQLLDESKKHPQALIVCPTRELCLQIVKEIEIFKKHMKGMQVVAVYGGTSIGMQIRDIK
RGIQIVVATPGRLIDLIERKAINLGEIKYVVLDEADEMLNMGFQDDIEFILQNTPKKEST
WLFSATMPPEIRKVSRKYMKEPVEVTVGKMNTANVNIDHQYFVVSSQHRYEALKRLIDFN
PGIYGIIFTRTKIDAQNISEKLTREGYDIDALHGDLTQQQRDAVMGQFRDRTLQLLIATD
VAARGIDVKDITHVINYELPDDIEVYTHRSGRTGRAGKTGICMSIVHSREIGKVRQIERI
VQSKFNKLEIPTGKDVCRKQFFSFMDKLINMDVSSEEYETYVPMLQEKFADISKEEILKR
VASMEFDRFLKYYENAEDLNIRERGREFDKFKRDGGGRGIERERPGSGRTRERERQPYRD
TQGRDFNGGGGSGNYTRLFVNLGTKDGFYKASFLQFILDMSDLKKDSLGKIDMREMNSWV
EVDSKAATQMIRSIDGKKFKGRNIRMNDANSR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaacacatttgaagcgcttggactggatgaaagattgatgaaagcgattagtgaactc
ggttttacaactcccactcctattcaggaaaaagcaatccccgttctgctcagcggaacc
acggatttgatcggccttgcccaaacgggtaccggcaaaacagcagcctttggtttacca
ttgctgcaattattagacgaaagcaaaaaacacccacaggcattgatcgtttgtcctaca
cgtgaactttgcctgcaaatcgttaaagagatagaaattttcaagaaacacatgaaggga
atgcaggtggtagctgtttacggcggcacctctatcggcatgcagatccgtgatatcaag
cgtggtatccagatcgttgttgccactcccggtcgtttgattgatctgatcgaacgcaag
gccatcaaccttggtgaaattaagtatgtggtgcttgatgaagcagatgaaatgctgaac
atgggtttccaggatgatattgaattcattctgcagaacacgcctaagaaagaaagtacc
tggttattcagtgctaccatgccacctgaaattcgtaaggtgagccgtaagtatatgaaa
gaaccggtagaagttactgttggtaaaatgaatacagccaatgtaaatatcgatcaccag
tattttgtggtgtcatcacaacaccgctacgaagcattgaaacgtttgatcgatttcaac
cccggcatttacgggatcatttttacacgtaccaaaattgatgcacaaaacatttccgag
aaactcacacgtgaaggatatgatattgatgcattgcatggcgatcttacacagcagcaa
cgtgatgcggtaatgggtcagttccgtgacagaacattgcaactgcttattgcaacagat
gtagctgcacgtggtatcgatgtaaaagatattacgcatgtcattaactacgaattaccc
gacgatattgaagtgtacacccaccgcagtggtcgtacaggtcgtgccggtaaaacgggt
atctgtatgagcattgtacacagtcgtgaaattggcaaggttcgccagatcgaacgtatt
gtgcaatcgaagtttaataaacttgaaataccaaccggtaaagatgtttgccgtaaacag
ttcttctcgtttatggataagctcatcaacatggatgtaagcagtgaagaatacgaaact
tatgtaccgatgctgcaggaaaaatttgctgacatcagtaaggaagaaattctgaagcgt
gttgcatcaatggagttcgatcgtttcctcaagtattacgaaaacgcagaagacctcaac
attcgtgagcgtggccgtgagtttgataaattcaagcgtgatggtggtggtcgtggtatc
gaaagagaaagaccgggatcaggacgtacacgtgaacgtgagcgccaaccttaccgtgat
acacaaggtcgtgatttcaatggtggtggcggttcaggcaattacacccgcttgtttgta
aacctcggaacaaaagatggtttttacaaagcaagtttcctgcaattcattttagatatg
agcgatcttaaaaaagattcactcggcaaaattgatatgcgtgaaatgaacagctgggtt
gaagttgacagtaaagcagcaacgcagatgatccgttctattgatggaaaaaagttcaag
ggacgaaacatccgcatgaatgatgcgaacagcagataa
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